#NEXUS
[written Tue Nov 23 15:48:19 PST 2004 by Mesquite  version 1.02 (build g7)]

BEGIN TAXA;
	TITLE ABC_Transporters; [internal gene family name is 8_1/D]
	DIMENSIONS NTAX=8;
	TAXLABELS
		YDR011W YNR070W YPL058C YOR328W YDR406W YOR153W YIL013C YOR011W 
	;

END;


BEGIN CHARACTERS;
	TITLE  YPD_data;
	DIMENSIONS NCHAR=10;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   -0.3 -0.42 0.65 -0.23 0.05 -0.1 0.41 -0.21 0.16 0.03
	YNR070W   -0.25 -0.41 1.41 -0.58 0.17 0.05 0.9 -0.83 0.11 0.69
	YPL058C   -0.05 -1.06 0.99 -1.14 1.0 -0.01 -0.57 0.54 0.11 -0.35
	YOR328W   0.01 -0.46 0.6 0.45 0.24 1.07 0.27 -0.84 0.58 -0.18
	YDR406W   0.08 -0.37 0.74 0.47 -0.56 0.38 0.06 0.36 0.32 -0.77
	YOR153W   -0.81 -0.75 -0.25 0.29 0.12 0.56 -0.55 1.83 -1.78 0.13
	YIL013C   -0.28 0.34 -0.1 -0.08 0.48 -0.26 0.1 0.42 -1.55 1.97
	YOR011W   -0.64 0.32 1.23 -1.27 -0.96 1.23 -0.49 0.64 1.47 -2.27

;

END;

BEGIN CHARACTERS;
	TITLE  Zinc;
	DIMENSIONS NCHAR=9;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   -0.37 0.13 0.03 0.13 0.02 0.31 -0.56 0.05 -0.12
	YNR070W   0.0 -0.42 -0.28 -0.19 0.84 -1.21 0.63 -0.58 -0.33
	YPL058C   0.06 -1.06 0.4 0.48 -0.24 0.45 -0.36 -0.38 0.4
	YOR328W   0.31 -0.16 -0.64 0.7 -0.21 0.2 -0.8 0.11 0.37
	YDR406W   0.21 -0.49 -0.38 0.46 0.33 -0.82 0.26 -0.28 0.32
	YOR153W   0.39 -0.09 0.18 -0.14 -0.7 2.22 -1.75 1.01 -0.63
	YIL013C   -0.04 -0.21 0.15 -0.45 0.28 0.27 -0.81 -0.13 0.56
	YOR011W   -0.23 -0.53 -0.39 -0.03 1.29 -0.14 -1.19 2.0 -0.88

;

END;

BEGIN CHARACTERS;
	TITLE  Cell_cycle_CDC15;
	DIMENSIONS NCHAR=21;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   0.02 0.45 -0.62 -0.1 0.97 -1.26 1.32 -0.94 -0.38 0.93 -0.25 0.46 0.07 -1.9 1.07 -0.36 0.77 0.3 -1.59 0.63 -0.51
	YNR070W   -0.78 0.08 0.23 0.2 0.94 -1.29 0.95 -0.39 -0.27 0.27 -0.04 -0.15 0.56 -0.85 1.28 -1.23 1.5 -0.78 -0.52 0.33 -0.44
	YPL058C   0.59 -0.05 -0.3 0.26 -0.32 0.42 -0.41 0.33 -0.36 -0.32 -0.21 0.58 -0.69 0.61 -1.0 0.43 0.0 0.49 -0.17 -0.02 0.03
	YOR328W   0.73 0.11 -0.02 -0.57 -0.61 0.74 -0.71 0.78 0.02 -0.8 -0.11 0.44 -0.52 0.8 -0.43 0.33 -1.12 0.11 1.22 -0.41 -0.04
	YDR406W   -0.26 -0.13 -0.06 0.32 0.49 -0.75 0.83 -0.85 0.3 0.19 0.13 -0.13 0.44 -0.82 0.78 -0.55 0.78 -0.37 -1.05 0.2 -0.3
	YOR153W   -0.89 -1.34 1.0 1.7 0.64 -0.33 0.25 -0.49 -1.02 -0.06 0.56 0.17 0.28 -0.08 0.68 -0.96 0.43 -0.54 -0.58 0.1 0.07
	YIL013C   -0.25 0.09 0.02 0.28 -0.14 -0.38 0.44 -0.03 0.14 -0.3 0.51 -0.25 0.05 -0.23 0.06 -0.12 0.58 -1.01 0.31 -0.23 0.37
	YOR011W   0.05 0.2 -0.47 -0.1 0.31 -0.11 0.6 -0.65 -1.21 1.39 0.18 0.57 -0.39 -1.4 1.35 -0.59 1.05 -0.79 -0.45 0.22 -0.31

;

END;

BEGIN CHARACTERS;
	TITLE  AminoAcidStarvation;
	DIMENSIONS NCHAR=5;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   0.45 0.19 -0.67 -0.43 0.19
	YNR070W   0.28 -0.01 -0.34 -0.48 0.67
	YPL058C   0.53 -0.57 -0.13 0.21 -0.4
	YOR328W   0.08 -0.31 -0.39 0.26 -0.55
	YDR406W   0.42 -0.36 0.14 -0.91 0.57
	YOR153W   -0.36 -0.04 -0.26 -1.78 0.19
	YIL013C   0.1 0.14 -0.76 0.04 0.17
	YOR011W   2.31 -1.27 -0.9 -0.29 -1.15

;

END;

BEGIN CHARACTERS;
	TITLE  CellCycleAlpha;
	DIMENSIONS NCHAR=16;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   -0.48 0.41 -0.17 0.11 0.3 0.46 -0.4 -0.18 -0.18 -0.07 -0.08 0.22 0.19 0.23 -0.46 0.22
	YNR070W   -0.2 0.26 -0.3 0.32 -0.36 -0.13 0.49 -0.1 0.71 -0.94 -0.12 0.29 0.55 -0.09 -0.32 0.09
	YPL058C   0.52 -0.19 -0.44 0.4 -0.73 0.55 -0.23 -0.02 -0.08 0.34 -0.24 -0.12 0.4 -0.36 -0.1 0.5
	YOR328W   0.07 0.16 -0.18 0.04 -0.33 0.39 -0.13 0.0 -0.15 0.18 -0.21 0.25 -0.31 0.24 -0.2 0.6
	YDR406W   -0.57 0.7 0.03 -0.05 0.57 -0.68 0.01 -0.32 0.73 -1.1 0.45 -0.42 1.1 -0.35 0.14 -0.18
	YOR153W   -0.15 -0.56 -0.03 0.38 0.46 0.35 -0.09 -0.43 -0.08 -0.15 -0.11 0.2 0.62 0.46 -0.42 0.13
	YIL013C   0.05 0.26 -0.55 0.8 -0.98 0.42 0.09 -0.11 -0.11 0.18 -0.07 -0.03 -0.21 0.35 -0.11 0.22
	YOR011W   0.02 0.05 -0.16 0.26 -0.15 0.1 -0.29 0.11 0.16 -0.16 0.18 -0.46 0.36 -0.13 0.24 0.07

;

END;

BEGIN CHARACTERS;
	TITLE  CellCycleCDC28;
	DIMENSIONS NCHAR=13;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   -1.36 0.11 0.6 0.77 -0.03 0.34 0.05 0.08 -0.16 -0.13 -0.17 0.18 0.18
	YNR070W   0.48 -1.12 0.55 -0.18 0.18 0.11 -0.05 0.0 -0.12 -0.33 0.56 0.74 -0.91
	YPL058C   -2.62 0.44 0.61 0.26 0.86 0.72 0.93 0.35 -0.57 -0.19 -0.55 0.35 0.67
	YOR328W   0.48 -0.24 0.02 -0.1 0.07 0.05 -0.28 -0.04 0.0 -0.14 -0.09 -0.55 0.74
	YDR406W   0.18 -0.1 -0.3 0.08 0.45 -0.39 -0.24 0.47 -0.28 -0.16 -0.22 0.82 -0.01
	YOR153W   -0.91 -0.4 0.47 0.91 -0.31 0.33 -0.11 0.11 1.09 -0.5 -1.24 0.95 0.33
	YIL013C   0.2 -0.77 0.36 0.73 0.47 -0.23 -0.41 -0.22 0.0 -0.34 0.1 -0.61 -0.44
	YOR011W   0.05 -0.64 0.26 0.86 0.05 -0.3 -0.18 0.21 -0.64 0.38 -0.17 -0.21 0.5

;

END;

BEGIN CHARACTERS;
	TITLE  CellCycleElu;
	DIMENSIONS NCHAR=12;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   0.82 -0.78 -0.13 -0.11 0.0 0.13 -0.28 0.5 -0.14 -0.05 -0.18 0.16
	YNR070W   1.1 -1.05 0.1 0.05 -0.35 0.2 -0.14 -0.21 -0.07 0.24 -0.2 0.28
	YPL058C   0.33 0.73 -0.89 0.11 -0.26 0.17 -0.48 0.68 -1.15 0.52 -0.52 0.86
	YOR328W   0.86 -1.05 0.5 -0.64 -0.09 0.13 0.53 0.04 -0.37 -0.49 1.02 -0.81
	YDR406W   0.53 -0.7 0.15 -0.2 0.61 -0.67 0.19 0.42 -0.48 0.04 0.2 -0.37
	YOR153W   0.99 -1.27 -0.09 0.26 -0.19 0.09 0.18 0.25 0.26 -0.79 0.12 0.15
	YIL013C   0.03 0.39 -0.54 0.1 0.04 0.14 -0.26 0.36 -0.38 0.26 -0.75 0.63
	YOR011W   0.0 -0.34 -0.07 0.62 -0.55 0.32 0.02 0.46 -0.31 -0.17 0.55 -0.66

;

END;

BEGIN CHARACTERS;
	TITLE  Diamide;
	DIMENSIONS NCHAR=6;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   0.56 -0.02 -0.15 -0.55 0.29 0.05
	YNR070W   0.04 0.03 -0.25 0.08 0.14 -0.23
	YPL058C   0.25 -0.02 -0.36 0.07 0.11 -0.86
	YOR328W   -0.23 -0.06 0.29 -0.02 -0.04 0.19
	YDR406W   0.74 -0.07 -0.3 -0.42 0.04 -0.21
	YOR153W   0.42 -0.09 -0.35 -0.01 -0.24 0.49
	YIL013C   -0.34 0.46 0.28 -0.31 -0.32 0.02
	YOR011W   -1.06 0.12 0.22 0.03 0.34 -0.02

;

END;

BEGIN CHARACTERS;
	TITLE  DiauxicShift;
	DIMENSIONS NCHAR=7;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   -0.06 -0.3 -0.28 -0.05 0.09 -0.8 0.98
	YNR070W   -0.23 -0.31 0.27 -0.27 -0.22 -0.1 0.1
	YPL058C   -0.23 -0.15 0.11 0.17 0.1 -0.86 0.05
	YOR328W   -0.22 -0.05 0.02 -0.26 -0.16 -0.33 0.4
	YDR406W   0.08 -0.02 -0.05 -0.13 -0.2 -0.13 0.03
	YOR153W   0.19 -0.09 0.04 -0.5 -0.38 -1.15 -0.05
	YIL013C   -0.42 0.04 0.24 -0.08 -0.27 0.39 -0.08
	YOR011W   -0.23 0.09 0.18 -0.22 0.01 0.17 -0.06

;

END;

BEGIN CHARACTERS;
	TITLE  CarbonSourceChange;
	DIMENSIONS NCHAR=6;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   0.39 0.0 0.39 0.63 0.37 0.42
	YNR070W   -0.59 0.34 0.2 0.09 0.13 0.0
	YPL058C   -0.17 -0.27 -0.91 -0.45 0.1 -0.43
	YOR328W   1.51 1.13 -0.13 -0.07 -0.25 -0.4
	YDR406W   0.32 -0.36 -0.21 0.25 0.27 0.28
	YOR153W   0.28 1.27 2.39 1.97 1.54 2.05
	YIL013C   -0.21 -1.48 -0.68 -0.64 -0.37 -0.55
	YOR011W   0.76 -1.13 1.4 1.88 1.15 0.1

;

END;

BEGIN CHARACTERS;
	TITLE  DTT2;
	DIMENSIONS NCHAR=7;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   0.14 0.03 -0.6 0.18 -0.1 0.3 0.42
	YNR070W   -1.21 0.84 0.55 0.14 -0.35 -0.04 -0.12
	YPL058C   -0.37 -0.52 0.51 0.39 -0.32 -0.05 0.16
	YOR328W   -0.43 -0.06 0.06 0.01 0.84 0.49 -0.93
	YDR406W   -0.57 0.55 -0.21 0.19 -0.29 0.33 -0.15
	YOR153W   -0.11 0.11 0.04 0.54 -0.13 -0.26 -0.05
	YIL013C   -0.87 0.22 -0.08 -0.26 -0.25 1.01 0.18
	YOR011W   -0.58 -0.05 0.88 0.21 -0.13 -0.65 0.44

;

END;

BEGIN CHARACTERS;
	TITLE  H2O2;
	DIMENSIONS NCHAR=10;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   0.67 0.15 -0.69 0.56 -0.71 0.23 -0.17 0.36 -0.23 0.37
	YNR070W   -0.4 -0.19 0.53 -1.83 2.05 -0.55 0.69 -0.19 0.36 -0.39
	YPL058C   0.12 -0.96 2.39 -1.28 0.01 0.47 -0.77 -0.08 -0.51 0.03
	YOR328W   -0.03 -0.68 1.68 -2.61 1.82 0.1 -0.34 0.25 0.24 -0.27
	YDR406W   -0.4 0.0 0.58 -0.25 -0.27 0.12 0.33 0.1 -0.25 0.23
	YOR153W   0.1 0.8 -0.36 -0.36 0.52 0.26 -0.37 0.49 -0.31 -0.13
	YIL013C   -0.35 0.42 -0.39 0.73 -0.85 -0.08 0.23 0.09 -0.37 0.43
	YOR011W   0.01 -2.26 0.93 1.24 0.24 -0.38 0.05 0.25 -0.04 -0.21

;

END;

BEGIN CHARACTERS;
	TITLE  HeatShock2;
	DIMENSIONS NCHAR=7;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   -0.49 0.14 -0.68 1.06 0.39 -0.61 0.22
	YNR070W   -0.18 -0.68 0.6 0.72 -0.24 0.32 -0.62
	YPL058C   0.68 -1.68 1.11 1.39 -1.11 0.21 -0.33
	YOR328W   -1.17 0.08 0.4 1.03 0.26 -0.37 -0.12
	YDR406W   -0.8 0.56 -0.99 0.77 0.88 -0.63 0.28
	YOR153W   -0.63 -0.01 0.15 0.45 0.36 -0.13 0.12
	YIL013C   -0.56 0.22 0.32 0.89 -0.69 0.26 -0.74
	YOR011W   0.14 0.01 0.55 -0.79 0.54 -0.79 0.42

;

END;

BEGIN CHARACTERS;
	TITLE  Menadione;
	DIMENSIONS NCHAR=8;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   -0.01 0.79 -0.14 -0.21 -0.16 0.1 -0.02 0.19
	YNR070W   0.13 -0.51 -0.09 0.31 -0.04 -0.22 -0.9 0.9
	YPL058C   -0.31 0.17 -0.24 0.33 -0.5 1.34 -1.11 1.04
	YOR328W   -0.29 -0.29 0.09 0.06 0.36 -0.42 0.64 -0.3
	YDR406W   -1.51 1.46 0.84 -0.75 -0.31 0.22 0.32 -0.54
	YOR153W   0.5 0.42 0.04 0.14 0.0 -0.33 1.01 -0.92
	YIL013C   -0.05 -0.47 0.09 0.27 -0.21 -0.2 0.37 -0.26
	YOR011W   0.04 0.02 0.53 -0.63 -0.08 -0.26 0.44 -0.07

;

END;

BEGIN CHARACTERS;
	TITLE  NitrogenDeletion;
	DIMENSIONS NCHAR=10;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   -0.25 0.08 -0.27 0.15 0.03 -0.24 -0.1 0.1 -0.33 -0.12
	YNR070W   0.05 0.24 -0.4 -0.34 0.3 0.46 -0.04 -0.15 -0.16 0.55
	YPL058C   -0.25 0.3 -0.24 -0.09 -0.05 0.26 -0.13 0.09 -0.61 0.52
	YOR328W   0.34 -0.1 -0.49 -0.13 0.79 -0.04 0.51 0.02 0.24 0.22
	YDR406W   -0.03 -0.33 0.04 -0.34 0.78 0.52 -0.91 -0.46 -0.31 0.62
	YOR153W   -0.42 -0.83 0.03 0.22 -0.29 -0.31 -0.8 0.15 -0.07 0.07
	YIL013C   0.16 -0.22 -0.27 0.08 0.11 -0.28 0.85 -0.15 -0.07 -0.17
	YOR011W   -0.17 -0.19 -0.22 0.24 -0.28 -0.32 -0.18 0.09 -0.33 0.07

;

END;

BEGIN CHARACTERS;
	TITLE  Sorbitol;
	DIMENSIONS NCHAR=7;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   0.1 -0.15 0.0 -0.04 0.0 -0.06 0.22
	YNR070W   0.16 -0.37 0.11 0.2 -0.16 0.18 -0.33
	YPL058C   -0.04 -0.17 -0.04 0.23 0.04 -0.01 -0.02
	YOR328W   0.24 0.02 -0.27 0.04 -0.1 0.06 -0.37
	YDR406W   -0.04 0.13 -0.24 0.1 -0.03 0.05 -0.11
	YOR153W   -0.25 0.05 -0.05 0.19 -0.14 0.3 0.04
	YIL013C   0.13 -0.26 -0.19 0.37 -0.12 0.01 -0.15
	YOR011W   -0.22 -0.05 0.15 -0.1 0.15 -0.35 0.22

;

END;

BEGIN CHARACTERS;
	TITLE  Sporulation;
	DIMENSIONS NCHAR=7;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YDR011W   0.22650853 1.543263209 0.021000299 0.061226799 0.506959989 -0.459783195 -0.444999737
	YNR070W   0.565597176 0.208399149 0.113528946 0.162105497 -0.464668267 -0.099535674 -0.129283017
	YPL058C   0.650764559 -0.065802058 0.137503524 0.034557222 -0.555389385 -0.025311089 0.256636635
	YOR328W   0.443606651 1.036658471 -0.994838295 -0.529370175 0.498119241 -0.316672369 -0.631612594
	YDR406W   -0.168122759 0.653549586 -0.669851398 -0.050040682 -0.300866479 -0.021061616 -0.043068722
	YOR153W   0.014355293 2.21523263 -0.890450538 0.44327118 -0.055577348 -0.226029164 0.0402171
	YIL013C   0.485426827 0.060541542 -0.029953222 -0.148644081 0.292553493 0.541709303 -0.077305726
	YOR011W   0.50589093 -0.381562795 -0.067744607 -0.13058411 -0.321928095 0.127111918 0.239670413

;

END;

BEGIN TREES;
	Title 'Trees from "8_1nex.tre"';
	LINK Taxa = Untitled_Block_of_Taxa;
	TRANSLATE
		1 YDR011W,
		2 YNR070W,
		3 YPL058C,
		4 YOR328W,
		5 YDR406W,
		6 YOR153W,
		7 YIL013C,
		8 YOR011W;
	TREE Family_8_1 = ((((1:0.268386,2:0.268386):0.380852,3:0.649237):0.213876,(4:0.304481,(5:0.232036,6:0.232036):0.072446):0.558631):0.204035,(7:0.297501,8:0.297501):0.769647):0.0;

END;