#NEXUS [File saved Tue Nov 23 16:09:21 2004] BEGIN TAXA; TITLE ADP_Ribosylation; [internal gene family name is 7_2/B] DIMENSIONS NTAX = 7; TAXLABELS YBR164C YDL192W YDL137W YOR094W YPL051W YPL218W YMR138W ; END; BEGIN CHARACTERS; TITLE Cell_Cycle_Alpha; DIMENSIONS NCHAR=14; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C -0.15 0.11 -0.39 0.48 -0.2 0.46 -0.29 0.26 -0.07 -0.27 -0.11 0.27 -0.39 0.7 YMR138W 0.1 -0.03 -0.17 0.48 -0.24 -0.03 -0.21 0.1 -0.3 0.38 -0.36 0.2 -0.02 0.14 YPL051W 0.18 0.19 -0.17 0.15 -0.09 -0.29 -0.08 -0.07 -0.06 0.21 -0.34 0.26 0.03 0.1 YPL218W -0.17 0.5 -0.29 0.38 -0.42 0.06 -0.4 0.2 -0.24 0.68 -0.47 0.48 -0.71 0.31 YOR094W 0.03 -0.17 0.48 -0.09 -0.1 0.07 -0.23 -0.07 0 0.33 -0.54 -0.19 0.77 -0.33 YDL192W -0.06 -0.07 -0.04 0.43 -0.2 0.19 -0.45 0.45 -0.28 0.29 -0.45 0.38 -0.09 -0.12 YDL137W -0.3 0.26 -0.19 0.33 -0.08 0.2 -0.43 0.46 -0.35 0.06 -0.2 0.47 -0.11 -0.33 ; END; BEGIN CHARACTERS; TITLE Cell_Cycle_CDC28; DIMENSIONS NCHAR=12; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C 0.06 -0.37 0.38 -0.19 0.11 -0.38 0.53 -0.03 -0.21 0.55 -0.71 0.44 YMR138W -0.59 0.5 -0.15 -0.27 0.43 -0.22 0.43 -0.17 0.34 0.17 0.01 -0.1 YPL051W -0.24 0.27 0.18 -0.34 0.18 0.01 0.24 0.07 -0.27 -0.42 0.46 -0.07 YPL218W -0.35 0.12 0.66 -0.4 0.1 -0.28 0.05 -0.01 -0.23 1.04 -0.53 -0.27 YOR094W 0.32 0.03 -0.36 -0.23 0.32 -0.14 -0.11 0.06 0.08 0.19 -0.81 1.01 YDL192W -0.77 0.58 0.51 -0.51 0.05 -0.37 0.5 -0.47 -0.11 1.48 -0.25 -0.34 YDL137W -0.25 -0.07 -0.26 0.12 0.17 -0.03 0.19 0.09 -0.15 0.76 -0.11 0.04 ; END; BEGIN CHARACTERS; TITLE Cell_Cycle_ELU; DIMENSIONS NCHAR=14; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C -0.34 0.24 0.09 0.13 0.11 -0.37 0.22 0.09 0.01 -0.32 0.13 0.14 -0.32 0.22 YMR138W 0.2 -0.41 0.46 -0.31 0.5 -0.6 0.33 -0.13 0.11 -0.4 0.11 0.02 -0.09 0.11 YPL051W 0.18 -0.03 -0.56 0.66 0.07 -0.34 0.1 -0.08 0.12 -0.17 0.13 -0.32 0 0.02 YPL218W -0.15 -0.15 -0.01 0.2 0.35 0.05 -0.44 0.32 -0.05 0.08 0 -0.17 -0.2 0.11 YOR094W 0.13 -0.08 -0.2 0.23 -0.01 0.65 -0.45 -0.22 -0.55 0.26 0.73 -0.8 -0.19 0.35 YDL192W -0.56 0.3 0.15 -0.17 0.49 -0.01 -0.61 0.47 0.1 0.14 0.2 -0.24 -0.35 0.11 YDL137W -0.24 -0.29 0.33 -0.2 0.11 0.2 -0.11 0.54 0.07 0.06 -0.51 0.45 -0.08 -0.3 ; END; BEGIN CHARACTERS; TITLE Diamide; DIMENSIONS NCHAR=8; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C 0.07 0.43 -0.17 -0.37 0.01 0.22 -0.03 -0.19 YMR138W -0.09 -0.14 -0.19 0.04 0.04 0.34 0.04 0.11 YPL051W -0.14 0.35 -0.11 -0.14 0.1 0.17 -0.37 0.29 YPL218W 0.45 0.08 -0.16 -0.07 0 0.28 -0.09 -0.22 YOR094W -0.06 -0.23 -0.25 -0.13 -0.09 0.33 0.2 0.01 YDL192W 0.55 0.31 -0.26 -0.08 0.03 0.03 0.18 -0.19 YDL137W 0.46 0.43 0.13 -0.08 0.14 0.24 0 -0.31 ; END; BEGIN CHARACTERS; TITLE Diauxic_Shift; DIMENSIONS NCHAR=7; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C 0.15 0.14 0.38 -0.52 -0.45 0.66 -0.98 YMR138W -0.15 0.18 0.25 -0.55 0.21 0.26 -0.09 YPL051W -0.22 0.08 0.14 -0.38 0.28 0.41 -0.8 YPL218W -0.2 -0.18 0.64 -0.05 -0.1 -0.71 -0.76 YOR094W -0.04 -0.34 0.29 -0.45 -0.02 0.29 -0.27 YDL192W 0.31 -0.27 0.38 -0.13 0.2 -0.64 -1 YDL137W 0.33 -0.05 0.13 -0.13 0.37 -0.19 -0.78 ; END; BEGIN CHARACTERS; TITLE Carbon_Change; DIMENSIONS NCHAR=6; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C -1 -0.51 0.25 -0.09 -0.47 0.31 YMR138W -0.81 -0.56 -0.18 -0.27 -0.18 -0.62 YPL051W -1.17 -0.37 -0.34 -0.09 -0.11 -1.24 YPL218W 0.14 0.15 0.01 0.15 0.12 -0.18 YOR094W -0.72 -1.31 -0.46 -0.54 -0.37 -0.46 YDL192W -0.58 0.01 0.53 0.53 -0.07 0.25 YDL137W 0.36 0.33 0.04 0.24 0.14 0.11 ; END; BEGIN CHARACTERS; TITLE DTT1; DIMENSIONS NCHAR=5; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C 0.06 0.43 -0.09 -0.24 -0.54 YMR138W -0.62 -0.47 0.09 0.64 0.48 YPL051W -0.29 -0.38 -0.36 0.58 0.07 YPL218W 0.64 0.4 -0.56 0.38 -0.08 YOR094W -0.29 -0.07 -0.15 0.11 0.23 YDL192W 0.51 0.65 -0.35 -0.01 -0.16 YDL137W 0.95 0.09 0.23 -0.32 -0.52 ; END; BEGIN CHARACTERS; TITLE DTT2; DIMENSIONS NCHAR=8; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C 0.36 0.54 -0.51 -0.15 0.14 -0.63 -0.11 0.36 YMR138W -0.12 0.33 0.24 -0.62 -0.1 -0.2 0.67 -0.2 YPL051W 0.02 0.03 0.23 -0.08 -0.27 -0.36 0.59 -0.16 YPL218W 0.36 0.13 0.03 -0.28 0.38 -0.01 -0.27 -0.34 YOR094W -0.76 0.62 0.63 -0.31 -1.18 0.47 0.35 0.18 YDL192W 0.53 0.23 -0.37 0.52 -0.33 -0.44 -0.08 -0.06 YDL137W 0.01 0.07 0.32 0.38 0.32 -0.64 -0.42 -0.04 ; END; BEGIN CHARACTERS; TITLE H2O2; DIMENSIONS NCHAR=8; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C 0.2 0.12 0.13 -0.3 0.06 -0.44 0.08 -0.02 YMR138W -1.18 -1.76 1.69 1.26 -0.16 0.35 0.22 -0.43 YPL051W 0.38 0.11 0.16 -0.32 0.24 -1.02 0.35 -0.17 YPL218W 0.23 -0.3 0.11 -0.26 0.13 0.13 -0.27 0.31 YOR094W -1.6 0.74 0.07 -0.02 0.36 0.11 0.55 -0.27 YDL192W -0.38 -0.48 0.54 -0.02 0.22 0.19 0.16 -0.15 YDL137W 0.1 -0.02 0.33 0.14 -0.03 -0.58 -0.12 0.06 ; END; BEGIN CHARACTERS; TITLE Heat2; DIMENSIONS NCHAR=7; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C 0.44 0.22 -0.2 -0.5 -0.34 0.04 0.33 YMR138W 0.53 0.17 0.09 -0.35 -1.04 -0.09 0.51 YPL051W 0.59 -0.35 -0.82 0.03 0.03 0.14 0.53 YPL218W 0.1 0.29 0.03 -0.14 -0.29 0.31 0.21 YOR094W 0.51 -0.12 0.2 0.13 -0.38 -0.71 0.62 YDL192W 0.78 0.11 -0.08 -0.66 -0.16 -0.09 0.26 YDL137W 0.42 -0.06 -0.25 -0.11 0.04 0.32 -0.13 ; END; BEGIN CHARACTERS; TITLE Menadione; DIMENSIONS NCHAR=9; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C 0.26 0.13 -0.05 0.04 -0.05 0.28 0.02 -0.17 0.28 YMR138W -0.18 -0.68 0.43 0.31 0.09 -0.11 -0.33 -0.47 1.17 YPL051W 0.52 0.03 -0.21 -0.03 0.19 0.09 -0.19 -0.5 0.63 YPL218W 0.32 -0.52 0.26 -0.21 -0.03 0.18 0.21 -0.13 0.41 YOR094W -0.06 -0.37 0.18 -0.02 -0.05 -0.02 -0.15 -0.25 0.23 YDL192W 0.21 -0.11 0.28 -0.22 -0.01 0.17 -0.16 0.2 0.13 YDL137W 0.53 0.1 0.08 0.15 -0.13 0.26 0.04 0.07 0.18 ; END; BEGIN CHARACTERS; TITLE Nitrogen_Deletion; DIMENSIONS NCHAR=9; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C 0.76 -0.06 -0.01 -0.3 -0.09 -0.5 -0.64 0.13 0.07 YMR138W -0.17 -0.28 0.52 0.26 -0.3 0.54 0.25 0.32 0.01 YPL051W 0.37 0.15 -0.18 0.2 -0.12 0.06 0.25 0.13 0.69 YPL218W -0.18 -0.14 0.05 -0.08 0.23 -0.97 0.23 0.11 0 YOR094W -0.29 0.14 -0.02 0.05 -0.18 -0.06 -0.04 -0.05 0.15 YDL192W 0.26 -0.35 0.64 -0.04 -0.71 -0.69 0.13 0.09 -0.04 YDL137W 0.33 0.37 0 -0.29 0.45 -0.63 -0.11 0 0.22 ; END; BEGIN CHARACTERS; TITLE Sorbitol; DIMENSIONS NCHAR=7; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C 0.5 0.03 -0.16 -0.16 -0.19 0.07 0.12 YMR138W 0.18 -0.11 -0.41 0.27 -0.07 0.04 -0.04 YPL051W -0.14 0.24 -0.03 -0.16 -0.05 -0.44 0.51 YPL218W 0.03 -0.57 0.2 0.44 -0.06 0 -0.05 YOR094W 0.12 -0.63 0.21 0.12 0.03 0.03 0.03 YDL192W 0.19 -0.7 0.31 0.41 -0.28 0.23 -0.31 YDL137W 0.03 -0.33 0.49 0.25 -0.12 -0.02 0.09 ; END; BEGIN CHARACTERS; TITLE Sporulation; DIMENSIONS NCHAR=7; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C -0.152003093 0.606178987 -0.098032083 -0.04580369 -0.059378547 -0.250961574 0.056583528 YMR138W 0.250961574 0.741806857 -0.614256808 0.461447964 -0.274362412 0.047934477 -0.148863386 YPL051W 0.40053793 -0.520832163 0.031026896 -0.015430041 0.229025514 0.371367028 -0.139551352 YPL218W 0.389566812 -0.332983283 -0.378511623 0.548436625 -0.197939378 0.415037499 -0.110182918 YOR094W 0.475084883 0.128986441 -0.402437462 0.176877762 -0.294447358 0.053439259 0.101283336 YDL192W -0.168122759 0.36975662 -0.290901199 0.605282485 -0.217356831 0.090908496 0.242701404 YDL137W -0.104697379 0.426625474 -0.662003536 0.845966371 -0.316857105 0.155794673 0.454258809 ; END; BEGIN CHARACTERS; TITLE YPD; DIMENSIONS NCHAR=9; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C 0.11 0.07 -0.74 -0.28 0.15 -0.6 -0.11 -0.44 0.2 YMR138W -0.17 0.07 -0.66 0.44 0.03 0.09 -0.12 -0.24 -1.04 YPL051W 0.58 -0.77 -0.69 -1.02 0.64 0.02 0.5 -0.07 -0.25 YPL218W -0.13 0.16 -0.88 0.55 0.07 -0.6 -0.2 0.3 -0.94 YOR094W -0.56 0.97 0.12 -0.3 -0.53 0.95 -0.6 -0.29 2.2 YDL192W 0.89 -0.59 -1.66 0.36 0.42 -0.48 -0.03 -0.51 0.31 YDL137W 0.7 -0.25 -0.39 0.01 0.04 -0.34 -0.35 -0.18 0.67; END; BEGIN CHARACTERS; TITLE Zinc; DIMENSIONS NCHAR=9; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C 0.29 -0.27 0.46 -0.17 -0.28 0.47 0.02 -0.69 0.51 YMR138W -0.38 0.45 -0.49 0.24 0.09 -0.65 0.27 0.37 0.09 YPL051W 0.1 -0.3 0.1 -0.17 0.07 -0.1 0.1 0.24 0.06 YPL218W 0.4 -0.14 -0.03 0.45 -0.23 -0.6 0.34 -0.04 0.16 YOR094W 0.23 0.11 0.38 0.03 -0.44 -0.02 0.45 -1.08 0.58 YDL192W 0.34 0.11 -0.16 0.39 -0.38 0.12 0.13 -0.02 0.14 YDL137W 0.33 -0.23 -0.13 -0.29 0.65 0.42 -0.89 0.74 -0.02 ; END; BEGIN CHARACTERS; TITLE Amino_Acid_Starvation; DIMENSIONS NCHAR=5; FORMAT DATATYPE = CONTINUOUS; MATRIX YBR164C -0.62 0.2 0.25 0.41 -0.18 YMR138W -0.71 -0.18 0.79 -0.12 -0.23 YPL051W -0.36 0.39 0.22 -0.08 0.2 YPL218W -0.66 0.15 -0.01 0.75 0.06 YOR094W 0.35 -0.49 0.28 -0.28 -0.82 YDL192W -0.47 0.55 0.41 0.08 0.31 YDL137W -0.47 0.27 0.34 0.57 0.19 ; END; BEGIN TREES; TRANSLATE 1 YBR164C, 2 YDL192W, 3 YDL137W, 4 YOR094W, 5 YPL051W, 6 YPL218W, 7 YMR138W ; UTREE * PHYLIP_1= (7:1.869463,(6:1.457423,(5:1.163385,(4:0.576783,(1:0.494098,(2:0.061078,3:0.061078):0.433020):0.082685):0.586602):0.294038):0.412039); END;