#NEXUS

[File saved Tue Nov 23 16:09:06 2004]

BEGIN TAXA;
	TITLE Alpha_Glucosidases; [internal gene family name 6_1/C]
	DIMENSIONS NTAX = 6;
	TAXLABELS
		YBR299W
		YGR292W
		YIL172C
		YOL157C
		YGR287C
		YJL216C
		;
ENDBLOCK;

BEGIN CHARACTERS;
	TITLE  YPD;
	DIMENSIONS NCHAR=10;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   0.24 0.66 1.01 -0.61 -0.63 0.1 -0.59 0.51 -0.59 0.27
	YJL216C   0.21 0.12 0.47 0.24 -0.22 -0.04 -0.77 0.24 0.36 0.72
	YGR292W   -1.15 1.27 1.76 -1.48 0.48 0.84 -2.16 1.94 -0.75 -1.43
	YIL172C   -0.23 0.34 2.47 -0.23 0.84 -0.65 -1.22 -0.01 0.14 -0.08
	YGR287C   -0.04 0.16 2.13 -0.17 0.71 -0.25 -0.6 -0.34 0.08 -0.25
	YOL157C   -0.4 0.13 1.68 0.36 -0.39 1.04 -1.1 -1.64 2.71 -1.78

;

END;

BEGIN CHARACTERS;
	TITLE  Zinc;
	DIMENSIONS NCHAR=9;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   0.05 0.06 -0.23 0.13 1.15 -1.96 1.42 -1.28 0.21
	YJL216C   -0.07 -0.72 -0.15 -0.09 0.27 -0.53 0.84 -0.73 -0.18
	YGR292W   -0.3 0.22 0.02 -0.34 1.4 -2.56 1.62 -1.41 0.25
	YIL172C   0.34 -0.63 -0.23 0.47 1.49 -2.53 1.46 -0.89 0.02
	YGR287C   0.26 -0.12 -0.23 0.4 1.48 -2.53 1.43 -1.33 -0.1
	YOL157C   0.06 0.02 -0.18 -0.1 1.36 -2.22 1.36 -0.75 0
	
;

END;
BEGIN CHARACTERS;
	TITLE  Cell_Cycle_CDC15;
	DIMENSIONS NCHAR=22;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   -0.6 0.7 0.05 -0.05 -0.24 -0.2 0.5 -0.76 0.44 0.44 0.4 -0.44 0.04 -0.81 1.19 -0.38 0.14 -0.45 0.98 -1.87 0.47 -0.05
	YJL216C   -0.45 0.46 -0.2 -0.12 0.24 -0.41 0.62 0.29 -0.61 0.26 0.4 -0.1 0.1 -0.82 0.61 -0.8 0.65 -0.05 0.66 -1.04 0.17 -0.18
	YGR292W   0.02 0.06 -0.18 -0.45 0.64 -0.18 0.48 -0.46 0.26 -0.24 0.02 -0.39 0.72 -0.02 -0.5 -0.17 0.63 -0.67 1.32 -0.59 -0.14 -0.23
	YIL172C   -0.09 -0.55 0.15 0.37 0.47 -0.25 0.4 -0.47 0.14 -0.08 -0.6 0.51 0.33 -0.48 0.64 -0.76 1.03 -0.32 0.18 -0.84 -0.2 0.18
	YGR287C   0.06 0.36 -0.16 -0.55 0.34 0.09 0.24 -0.39 -0.47 -0.1 0.58 0.03 -0.22 0.19 -0.29 0.32 -0.19 0.06 0.29 0.01 0.04 0
	YOL157C   0.01 0.42 -0.57 -0.35 0.89 -1.02 0.82 -0.49 0.46 -0.11 0.34 -0.55 0.77 -1.07 0.68 -0.76 0.62 0.04 0.62 -0.86 -0.16 0

;

END;
BEGIN CHARACTERS;
	TITLE  Cell_Cycle_CDC28;
	DIMENSIONS NCHAR=15;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   1.32 -0.96 0.54 0.1 -0.13 -0.62 -0.58 0.14 -0.1 0.44 -0.75 0.5 -0.19 -0.93 0.39 
	YJL216C   -0.57 1.35 0.4 -0.68 -0.83 -1.7 1 0.81 1 -0.9 0.55 -0.14 -0.07 -0.34 0 
	YGR292W   1.02 -0.21 0.64 -0.43 -0.72 0.15 -1.05 0.26 -0.08 0.23 0.21 0 -0.72 -0.11 0 
	YIL172C   1.05 -0.81 -0.37 0.43 -0.43 0.25 0.1 0.08 -0.16 -0.55 0.15 -0.25 0.15 0.12 -0.09 
	YGR287C   0.11 -0.83 0.22 0.31 0.3 -0.2 0.37 -0.04 0.04 0 0.11 -0.53 0.33 -0.33 -0.05 
	YOL157C   1.03 -0.69 -0.63 0.33 0.07 -0.27 0.21 -0.06 -0.02 -0.43 0.27 0.29 -0.22 0.17 -0.4 
;

END;
BEGIN CHARACTERS;
	TITLE  Amino_Acid;
	DIMENSIONS NCHAR=5;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   0.15 -0.26 -0.2 0.9 -0.19 
	YJL216C   0.44 -0.58 0.18 -0.11 -3.99 
	YGR292W   0.21 -0.12 0.08 -0.3 -0.82 
	YIL172C   0.68 -0.68 -0.2 -0.21 0.46 
	YGR287C   0.82 -0.48 -0.74 0.37 0.14 
	YOL157C   1.16 -3.05 1.25 -1.75 2.38 ;

END;
BEGIN CHARACTERS;
	TITLE  Cell_Cycle_Alpha;
	DIMENSIONS NCHAR=15;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   0.23 0.2 -0.38 -0.06 -0.09 0.25 -0.28 0.08 -0.02 -0.05 0.1 0.21 -0.41 0.15 -0.03
	YJL216C   -0.09 0.45 -0.31 -0.3 0.16 -0.04 -0.1 0.21 0.37 -0.41 0.38 -0.04 -0.35 -0.2 0.12
	YGR292W   0.29 0.1 -0.49 0.24 -0.41 0.29 -0.09 0.35 -0.35 -0.03 -0.04 0.28 -0.31 0.1 -0.07
	YIL172C   0.16 -0.25 -0.14 0.39 -0.04 -0.08 -0.24 0.08 -0.16 0.31 -0.2 0.05 -0.15 -0.07 -0.03
	YGR287C   0.08 0.14 -0.1 -0.04 -0.18 0.18 -0.15 0.02 -0.07 0.02 0.14 0.19 -0.52 0.36 -0.26
	YOL157C   0.08 -0.02 -0.1 0.21 -0.34 0.33 -0.3 0.02 0.05 -0.08 0.06 0.02 -0.1 0.33 0.15
;

END;
BEGIN CHARACTERS;
	TITLE  Cell_Cycle_elu;
	DIMENSIONS NCHAR=13;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   0.57 -1.03 -0.02 0.08 0.11 0.06 -0.06 0.31 0.1 -0.16 0.22 0.25 0.2
	YJL216C   -0.61 0.14 1.17 -1.06 0.23 -0.39 0.39 0.4 -0.27 0.11 -0.22 0.79 -0.1
	YGR292W   -0.24 -0.27 0.2 -0.23 0.28 0.12 0.02 0.12 0.27 0.03 -0.44 0.81 -0.14
	YIL172C   -0.02 0.82 -1.16 0.16 0 -0.26 0.17 0.02 0.55 -0.32 0.05 0.32 0.17
	YGR287C   -0.06 -0.12 -0.1 -0.13 0.11 0.11 -0.35 0.54 0.22 -0.08 0.23 0 0.23
	YOL157C   -0.33 -0.02 -0.07 -0.04 0.18 -0.11 0.02 0.46 0.21 -0.03 -0.36 0.79 0.07;

END;
BEGIN CHARACTERS;
	TITLE  Diamide;
	DIMENSIONS NCHAR=7;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   0.39 0.18 0.05 -0.02 -0.71 0.12 -0.26 
	YJL216C   0.19 -0.2 0.12 0.08 -0.88 0.15 0.14 
	YGR292W   -0.15 0.21 0.36 -0.08 0.26 -0.72 -0.3 
	YIL172C   0.72 0.13 -0.09 -0.23 -0.46 -0.17 0.2 
	YGR287C   0.77 0.27 -0.26 -0.08 -0.44 -0.55 0.19 
	YOL157C   0.74 0.1 -0.2 -0.13 -0.15 -0.13 -0.02 
;

END;
BEGIN CHARACTERS;
	TITLE  Diauxic_Shift;
	DIMENSIONS NCHAR=7;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   -0.01 -0.13 0.2 -0.24 -0.29 0.61 -0.37
	YJL216C   -0.6 0.13 0.53 -0.42 -0.2 1.52 -0.99
	YGR292W   -0.06 0.07 -0.15 -0.09 -0.13 -0.09 0.09
	YIL172C   -0.38 0.06 0.56 -0.56 0.08 0.91 -0.29
	YGR287C   -0.34 0.05 0.32 -0.41 0.06 0.58 -0.43
	YOL157C   -0.01 0.02 0.11 -0.52 0.39 1 -0.29
;

END;
BEGIN CHARACTERS;
	TITLE  Carbon_Change;
	DIMENSIONS NCHAR=6;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   0 0.25 -0.8 -0.54 0.61 -0.41 
	YJL216C   0.5 -0.45 -0.76 -0.49 -0.38 -0.09 
	YGR292W   -0.43 0.61 -2 -0.71 0.72 -0.84 
	YIL172C   0.36 -0.4 -0.61 -0.64 0.56 -0.45 
	YGR287C   0.01 -0.45 -0.74 -0.09 0.84 -0.36 
	YOL157C   0.04 -0.85 -0.97 0.15 -0.71 -0.3 
;

END;
BEGIN CHARACTERS;
	TITLE  DTT1;
	DIMENSIONS NCHAR=5;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   -1.15 -2.03 2.88 0.29 0.05
	YJL216C   -2.06 1.84 -0.27 -0.05 0.09
	YGR292W   -0.79 0.93 -0.41 -0.4 0.02
	YIL172C   -0.94 1.07 -0.13 -0.07 -0.16
	YGR287C   -0.54 0.36 0.56 -0.24 -0.34
	YOL157C   -1.25 1.05 0.11 -0.36 0.46
;

END;
BEGIN CHARACTERS;
	TITLE  DTT2;
	DIMENSIONS NCHAR=7;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   -0.02 0.05 -0.18 0.01 0.31 0.39 -0.67 
	YJL216C   -0.32 0.05 -0.13 -0.22 0.5 0.33 -0.55 
	YGR292W   -0.54 0.89 -0.96 1.67 -0.58 0.19 -0.84 
	YIL172C   -0.55 0.03 0.03 0.35 0.43 0.58 -0.87 
	YGR287C   -1 0.33 0.22 0.31 0.56 0.2 -0.47 
	YOL157C   -0.84 0.61 -0.9 1.63 -1.81 1.69 1.25 ;

END;
BEGIN CHARACTERS;
	TITLE  H2O2;
	DIMENSIONS NCHAR=9;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   -0.16 0.04 0.44 -0.2 0.05 0.28 -0.09 0.17 -0.08
	YJL216C   0.14 0.24 0.31 -0.57 -0.11 0.61 -0.79 0.41 0.14
	YGR292W   -0.84 0.91 -0.9 0.89 0.05 0.03 -0.14 -0.03 0.33
	YIL172C   0.27 -0.67 0.63 -0.06 -0.1 0 0.31 -0.26 0.24
	YGR287C   -0.56 -2.5 3.12 0.1 0.09 0.15 -0.41 0.16 0.03
	YOL157C   0.51 -0.71 -0.2 1.31 -0.61 -0.05 -0.18 0.13 0.06;

END;
BEGIN CHARACTERS;
	TITLE  Heat1;
	DIMENSIONS NCHAR=3;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   0.78 -0.88 -0.76 
	YJL216C   0.48 -0.33 -0.09 
	YGR292W   1.29 0.09 -1.32 
	YIL172C   1.28 0 -1 
	YGR287C   1.93 -0.15 -1.28 
	YOL157C   1.47 -0.26 -0.95 ;

END;
BEGIN CHARACTERS;
	TITLE  Heat2;
	DIMENSIONS NCHAR=7;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   -0.04 -0.55 0.27 0.74 -0.07 0.22 -0.31 
	YJL216C   -0.4 0.5 0.04 0.09 -0.17 0.54 -0.63 
	YGR292W   0.29 -0.13 -0.85 0.46 0.6 -0.13 -0.71 
	YIL172C   -0.69 0.01 0.15 0.65 0.72 -0.68 -0.52 
	YGR287C   -1.09 0.03 0.03 0.88 1.09 -0.63 -0.78 
	YOL157C   0.03 -0.59 0.05 0.3 1.35 -1.38 0.91 ;

END;
BEGIN CHARACTERS;
	TITLE  Menadione;
	DIMENSIONS NCHAR=9;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   -0.26 -0.15 0.16 0.26 -0.18 0.31 -0.17 0.44 -0.6
	YJL216C   -0.18 0.42 -0.39 0.31 -0.02 0.18 0.22 0.11 -0.95
	YGR292W   0.07 -0.48 0.29 -0.32 0.24 0.35 -0.23 -0.3 0.52
	YIL172C   0.29 -0.29 0.21 -0.04 -0.09 0.06 -0.02 0.25 -0.36
	YGR287C   -0.04 -0.19 0.16 0.08 -0.52 0.24 0.13 0.44 -0.48
	YOL157C   0.53 -0.42 0.13 0.08 -0.28 0.3 -0.02 0.09 -0.26
;

END;
BEGIN CHARACTERS;
	TITLE  Nitrogen_Deletion;
	DIMENSIONS NCHAR=10;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   0.56 -0.24 -0.39 -0.19 0.12 -0.04 -0.06 0.03 -0.13 0.21
	YJL216C   0.69 -0.13 -0.65 0.1 0.48 0.28 -0.49 -0.2 -0.09 -0.11
	YGR292W   0.42 0.07 -0.44 -0.23 0.25 0.29 -0.48 0.05 -0.36 0.46
	YIL172C   1.07 -0.33 -0.73 -0.21 0.74 -0.05 -0.18 0.09 0.13 0.08
	YGR287C   1.21 -0.38 -0.75 -0.25 0.93 -0.44 -0.11 0.13 0.24 0.25
	YOL157C   0.69 0.1 -0.53 -0.38 0.63 -0.09 0.18 -0.2 0.2 0.48
;

END;
BEGIN CHARACTERS;
	TITLE  Sorbitol;
	DIMENSIONS NCHAR=5;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   0.11 0.23 -0.46 -0.41 0.06 
	YJL216C   0.03 0.6 -0.02 -0.33 -0.39 
	YGR292W   -0.24 -0.67 0.84 0.86 -0.12 
	YIL172C   -0.04 0.6 -0.53 -0.17 -0.43 
	YGR287C   -0.03 0.74 -0.35 -0.27 -0.23 
	YOL157C   0.19 0.19 -0.37 -0.05 -0.03 ;

END;
BEGIN CHARACTERS;
	TITLE  Sporulation;
	DIMENSIONS NCHAR=7;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBR299W   0.263034406 -0.678071905 1.23878686 -0.049753035 -0.406625259 -0.707446507 0.188072348 
	YJL216C   0.042644337 -0.227068909 0.447458977 -0.138706271 -0.638901308 0.296981738 -0.296981738 
	YGR292W   0.50589093 0.040077439 -0.019899557 -0.093109404 -0.194172548 -0.049753035 0.243925583 
	YIL172C   -0.168122759 -0.475733431 1.21916852 -0.163886085 -0.826463745 -0.447458977 0.101283336 
	YGR287C   0.150559677 -0.624490865 1.124695747 -0.399802986 -1.012174714 -0.154722595 0 
	YOL157C   0.084064265 -0.37036845 0.96437609 -0.074000581 -1 -0.058102955 -0.14543044 ;

END;

BEGIN TREES;
	TRANSLATE
		1	YBR299W,
		2	YGR292W,
		3	YIL172C,
		4	YOL157C,
		5	YGR287C,
		6	YJL216C
		;
	UTREE * PHYLIP_1= (6:0.396647,((1:0.002278,2:0.002278):0.239324,(5:0.068564,(3:0.007237,4:0.007237):0.061327):0.173039):0.155045);
ENDBLOCK;