#NEXUS

[File saved Tue Nov 23 16:09:54 2004]

BEGIN TAXA;
	TITLE Kinases; [internal gene family name is 7_1/A]
	DIMENSIONS NTAX = 7;
	TAXLABELS
		YBL016W
		YGR040W
		YPR054W
		YDL108W
		YBR160W
		YPL031C
		YMR139W
		;
END;

BEGIN CHARACTERS;
	TITLE  Cell_cycle_CDC15;
	DIMENSIONS NCHAR=18;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBL016W -0.17 0.33 -0.61 0.57 -0.21 0.31 -0.2 0.1 -0.3 -0.18 0.01 -0.2 0.22 0.08 0.08 0.91 0 0.04
	YDL108W -0.07 0.25 -0.35 0.37 -0.39 0.19 -0.24 0.26 -0.38 0.43 -0.29 0.35 0.42 -0.52 0.13 0.72 -0.1 -0.6
	YBR160W -0.26 0.13 -0.24 0.66 -0.32 0.27 -0.32 0.22 -0.3 0.22 -0.2 0.12 -0.43 0.15 -0.15 0.89 -0.41 -0.24
	YPL031C 0.13 -0.12 0.36 -0.47 0.8 -0.79 -0.1 -0.48 0.5 -0.43 0.5 -0.87 -0.38 0.27 -0.36 -0.1 -0.18 0.12
	YMR139W 0.04 -0.15 0.17 -0.13 0.13 -0.34 0.55 -0.57 0.49 -0.28 0.43 -0.99 0.33 0.16 -0.35 -0.14 0.45 0.28
	YPR054W -0.15 0.08 0.05 0.21 -0.1 0.14 -0.05 0.03 -0.2 0.02 -0.55 0.93 0.23 -0.52 0.19 -0.76 1.27 -0.65
	YGR040W -0.08 -0.05 -0.18 0.14 0.04 0.15 -0.04 -0.08 0.13 -0.07 0.06 2.48 0.65 -0.35 0.6 0.24 -0.64 0.16

;

END;

BEGIN CHARACTERS;
	TITLE  Amino_Acid_Starvation;
	DIMENSIONS NCHAR=5;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBL016W -0.38 0.28 -0.04 0.08 -0.28 
	YDL108W 0.26 0.14 0.04 -0.24 -0.01 
	YBR160W 0.19 -0.03 -0.01 0.27 0.12 
	YPL031C -0.07 -0.23 -0.12 0.6 0.12 
	YMR139W 1.32 -1.57 -0.15 0.51 0.43 
	YPR054W 0.54 -0.62 0.16 -0.41 0.17 
	YGR040W 0.21 0.02 -0.04 0.13 0.45 

;

END;

BEGIN CHARACTERS;
	TITLE  Cell_Cycle_CDC28;
	DIMENSIONS NCHAR=12;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBL016W 0.28 -0.64 0.33 -0.04 0.38 -0.6 0.33 0.18 -0.2 0.01 -0.03 -0.37
	YDL108W 0.26 -0.14 -0.01 0.13 -0.21 0.05 -0.14 0.28 -0.15 -0.33 0.25 -0.14
	YBR160W -0.46 0.61 0.56 -0.65 -0.2 0.1 0.39 -0.41 -0.24 0.6 -0.25 -0.04
	YPL031C 0.34 -0.92 0.12 0.01 -0.12 0.39 -0.22 0.08 0.45 -0.01 0.06 0.56
	YMR139W -0.54 -0.09 -0.2 0.6 0.24 -0.26 -0.07 -0.17 0.92 -0.05 -0.1 0.32
	YPR054W 0.91 -0.97 0.33 -0.19 -0.87 1.11 -0.24 0 0.54 -0.83 0.53 -2.11
	YGR040W 0.17 0.23 -0.17 -0.23 -0.14 0.26 -0.17 -0.1 0.19 -0.08 0.27 -0.23

;
END;

BEGIN CHARACTERS;
	TITLE  Cell_Cycle_ELU;
	DIMENSIONS NCHAR=14;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBL016W -0.8 0.75 0.03 0.1 0.29 -0.39 0.05 0.11 0.05 -0.15 -0.2 0.34 -0.37 0.4 
	YDL108W 0.02 -0.03 0.46 -0.78 0.4 0 -0.05 -0.04 -0.12 0.21 0.05 -0.3 -0.15 0.53 
	YBR160W -0.96 0.37 0.64 -0.2 0.15 -0.28 0.51 0.06 0.12 0.06 -0.49 0.79 -1.39 1.01 
	YPL031C 0.71 -0.77 0.03 -0.1 -0.04 -0.09 0.25 0.19 -0.13 -0.23 -0.16 0.41 0.06 -0.09 
	YMR139W 1.2 -1.36 0.08 -0.45 -0.13 0.31 -0.28 0.49 0.45 -0.26 -0.08 0.63 -0.34 -0.1 
	YPR054W 0.13 -0.12 -0.28 0.16 0.22 -0.14 0.04 0.21 -0.21 -0.06 -0.41 0.55 -0.07 0.31 
	YGR040W -0.93 0.49 0.54 0.18 -0.03 -0.06 -0.03 -0.08 -0.6 0.55 0.33 -0.33 0.09 0.18 

;
END;
BEGIN CHARACTERS;
	TITLE  Diamide;
	DIMENSIONS NCHAR=8;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBL016W -0.25 -0.46 -0.18 0.71 0.03 0.31 0.48 -0.18
	YDL108W 0.33 -0.09 -0.16 -0.04 0.07 0.03 0.01 -0.04
	YBR160W 0.16 0.2 0.14 -0.26 0.24 -0.04 -0.11 -0.04
	YPL031C 0.51 0.16 -0.1 -0.03 0.03 -0.08 -0.1 -0.31
	YMR139W 0.76 0.42 0.3 -0.25 -0.41 -0.25 0.2 -0.47
	YPR054W -0.03 -0.13 0.28 0.21 -0.01 -0.11 -0.18 0.09
	YGR040W 0.03 0.12 0.03 0.33 0.42 0.03 0.14 -0.08

;
END;
BEGIN CHARACTERS;
	TITLE  Diauxic_Shift;
	DIMENSIONS NCHAR=7;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBL016W 0.06 0.2 0.22 -0.62 -0.48 0.86 0.31 
	YDL108W -0.1 0.38 -0.1 -0.28 -0.22 0.39 -0.5 
	YBR160W -0.22 0.78 -0.6 0.16 -0.15 0.32 -1 
	YPL031C -0.09 -0.11 0.77 -0.66 0.4 0.45 -0.02 
	YMR139W -0.04 0.2 -0.23 0.26 -0.11 1.05 -0.11 
	YPR054W -0.17 0.17 -0.03 -0.86 0.18 -0.61 0.87 
	YGR040W -0.12 0.23 0.44 -0.67 -0.26 0.57 -0.23 

;
END;
BEGIN CHARACTERS;
	TITLE  Carbon_Change;
	DIMENSIONS NCHAR=6;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBL016W 0.11 -0.43 -0.01 0.39 -0.47 -0.1
	YDL108W -0.47 -1.47 -0.4 -1.06 -0.47 0.08
	YBR160W -0.17 -0.04 0.34 0.64 -0.54 0.2
	YPL031C 0.49 0.25 0.29 0.37 0.37 -0.42
	YMR139W 0.3 0.06 -0.04 -0.6 -0.03 -0.3
	YPR054W 0.19 0.6 0.44 0.52 0.44 0.71
	YGR040W -0.18 -0.14 -0.14 0.12 -0.04 0.12
;
END;
BEGIN CHARACTERS;
	TITLE  DTT1;
	DIMENSIONS NCHAR=2;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBL016W -1.43 0.96 
	YDL108W -0.79 0 
	YBR160W -0.58 0.65 
	YPL031C -1.06 1.02 
	YMR139W -0.17 0.46 
	YPR054W -1.45 1.27 
	YGR040W -1 0.83 

;
END;
BEGIN CHARACTERS;
	TITLE  DTT2;
	DIMENSIONS NCHAR=7;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBL016W 0.1 0.09 -0.33 0.33 0.53 -0.56 0.25 
	YDL108W -0.42 0.42 0.12 0.04 0.16 -0.24 -0.2 
	YBR160W -0.03 0.36 -0.23 0.26 0.2 0.11 -0.79 
	YPL031C 0.09 -0.17 0.27 -0.02 0.24 0.11 -0.64 
	YMR139W -0.74 0.44 0.6 0.19 0.2 0.07 -1.06 
	YPR054W 0.23 -0.33 0.09 0.14 0.04 0.38 -0.09 
	YGR040W -0.34 -0.17 0.26 0.61 0.15 -0.41 -0.11 
;
END;
BEGIN CHARACTERS;
	TITLE  H2O2;
	DIMENSIONS NCHAR=5;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBL016W -1.03 0.32 -0.44 0.98 -0.45
	YDL108W -0.3 0.4 -0.48 0.21 0.27
	YBR160W 0.75 -1.2 -0.61 1.03 -0.29
	YPL031C -0.4 0.15 0.26 -0.28 0.33
	YMR139W 0.23 -1.15 1.66 -0.3 -0.08
	YPR054W 0.32 -1.06 0.65 -0.29 0.21
	YGR040W 1.7 -1 -0.7 0.6 -0.28
;
END;
BEGIN CHARACTERS;
	TITLE  Heat2;
	DIMENSIONS NCHAR=7;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBL016W 0.65 0.05 -0.03 -1.1 -0.31 0.81 0.23
	YDL108W 0 0 0 0.36 -0.21 0.09 0.06
	YBR160W -0.12 0.35 -0.46 0.09 0.6 -0.01 -0.22
	YPL031C 0.14 -0.13 -0.37 0.18 0.47 0.32 -0.59
	YMR139W -0.97 0.26 -0.15 1.15 0.61 -0.7 -0.8
	YPR054W -0.08 -0.5 -0.18 0.39 0.6 -0.09 0.13
	YGR040W 0.62 -0.37 0.01 -1.2 0.58 0.19 0.45

;
END;
BEGIN CHARACTERS;
	TITLE  Menadione;
	DIMENSIONS NCHAR=6;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBL016W -0.6 -0.07 -0.17 0.15 0.11 0.76 
	YDL108W -0.07 0.71 -0.41 -0.33 0.41 -0.32 
	YBR160W 0.81 -0.48 -1.22 1.92 -1.3 0.75 
	YPL031C -0.97 0.87 0.26 -0.05 -0.75 0.85 
	YMR139W 0.51 0.29 0.18 -0.41 0.35 -0.37 
	YPR054W -0.84 0.2 0.67 -0.07 0.6 -0.37 
	YGR040W -0.22 0.61 -0.06 0.1 -0.32 -0.05 
;
END;
BEGIN CHARACTERS;
	TITLE  Nitrogen_Deletion;
	DIMENSIONS NCHAR=10;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBL016W -0.84 0.85 0.02 -0.06 -0.61 0.34 -0.08 0.31 0.32 -0.09
	YDL108W 0.32 0.05 -0.08 -0.04 -0.1 0.14 0.42 0.1 0.21 -0.37
	YBR160W 0.51 -0.26 -0.18 0.09 0.42 -0.96 -0.02 -0.02 0.24 -0.24
	YPL031C 0.72 0.03 -0.56 -0.08 1.4 -0.94 0.42 0.01 0.04 0.23
	YMR139W 0.84 -0.43 -0.63 -0.16 0.86 -0.04 0.24 0.05 0.09 -0.05
	YPR054W 0.02 0.25 -0.51 0.06 0.35 -0.19 0 -0.08 -0.04 0.48
	YGR040W 0.45 -0.27 0.26 0.01 -0.72 0.07 -0.12 0.48 0.26 -0.18

;
END;
BEGIN CHARACTERS;
	TITLE  Sorbitol;
	DIMENSIONS NCHAR=7;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBL016W 0.04 -0.21 -0.07 0.13 -0.24 0.26 -0.17
	YDL108W -0.03 0.59 -0.36 -0.14 -0.2 0.18 -0.05
	YBR160W 0.65 0.5 -0.39 -0.38 0.1 0.12 0.5
	YPL031C 0 0.3 -0.64 -0.04 0.24 -0.2 -0.08
	YMR139W 0.15 0.78 -0.32 -0.24 -0.51 0.24 0.21
	YPR054W 0.2 -0.45 0.24 -0.02 0.29 -0.3 0.25
	YGR040W 0.08 0.07 -0.11 -0.11 0.26 -0.19 0.11

;
END;
BEGIN CHARACTERS;
	TITLE  Sporulation;
	DIMENSIONS NCHAR=7;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBL016W -0.234465254 -0.219566377 0.058102955 0.321928095 -0.380031049 0.349334252 -0.199308808
	YDL108W -0.13606155 0.374848409 -0.182203331 -0.13058411 -0.341036918 0.197446064 0.368151112
	YBR160W -0.029146346 0.575114715 0 -0.134542123 -0.273922722 0.218640286 -0.430144392
	YPL031C 0.22650853 -0.024874669 -1.038135129 0.762500686 0.275634443 0.503238103 -0.129559634
	YMR139W 0.250961574 -0.340228912 0.089267338 -0.304006187 -0.295455884 0.525461489 0.030057234
	YPR054W 0 0.722466024 -0.447458977 -0.652076697 -1.68182404 0.624490865 0.075948853
	YGR040W 0.056583528 0.439111634 -0.073462162 -0.526930379 0.660513534 0.175367087 -0.504674712

;
END;
BEGIN CHARACTERS;
	TITLE  YPD;
	DIMENSIONS NCHAR=10;
	FORMAT DATATYPE = CONTINUOUS;
	MATRIX
	YBL016W 0.44 -0.21 -0.2 1.29 -1.22 -0.09 -0.26 0.05 0.06 -0.22
	YDL108W 0.56 -0.35 -0.05 -0.36 0.06 0.54 0.18 -0.03 -0.11 0.02
	YBR160W 0.93 -0.67 0.49 -0.74 0.19 0.06 -0.35 0.12 -1.32 2.63
	YPL031C -0.39 0.03 1.35 -0.49 -0.17 -0.8 -0.13 0.22 -0.43 -0.93
	YMR139W 0.24 0.18 2.8 -0.92 -0.08 -0.03 -0.18 -0.97 0.77 -1.88
	YPR054W -0.45 0.22 1.03 -0.46 -1.39 1.2 0.22 -0.4 1.44 -1.7
	YGR040W -0.15 0.38 0.35 -1.01 -0.02 0.09 0.44 -0.55 0.13 0.49

;
END;

BEGIN TREES;
	TRANSLATE
		1	YBL016W,
		2	YGR040W,
		3	YPR054W,
		4	YDL108W,
		5	YBR160W,
		6	YPL031C,
		7	YMR139W
		;
	UTREE * PHYLIP_1= (7:0.951303,((3:0.642955,(1:0.402233,2:0.402233):0.240722):0.175363,(4:0.727070,(5:0.444801,6:0.444801):0.282269):0.091248):0.132985);
ENDBLOCK;