#nexus [Growth Hormone 2 Intron C- Manual Alignment] BEGIN DATA; dimensions ntax=18 nchar=818; FORMAT missing=? interleave matchchar=. symbols="0 1" datatype=dna gap=-; OPTIONS gapmode=missing; MATRIX B_lenok2N2 GTAAGTTACCTGGATGAGAC-AATTACCCATGTTATGCCCTTTAAAACAATATAAAGTGTAAAAGAGTGACAGTTTCACT-----ATTTACCTTAAAAATGAATTCCTCCATGATGCATGATTCCAAAATAAATAATAGGACATCTCAATTTGAACAATCGACACAACTTAGTCATTAGTTATTGGGCAAGCAGA-CCCCCGATTG-TCTAAACTCCACGGGGAAATATATACTGTAGATAAGCAGAGCCAGCATCATGCATGGTGGAAATTAAATCTAGCCATGACATGG-AGTTTTAAATTGTACACTT--------------------------------------------------------------AAAA-TCAGC-AGTAAAACTTT-----ACCTTAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTCAACTAAGGTAGGTAAAA-CAACCACATATCACAGTCATTGCAAGTAAAAC-CATCACTCTCTAA-TCGGCGGTTTCTCTACGTCTACATTA-TCCAGCCATGTATCATGT-------AAATGATATGGCATCTCAAGCTGTACAAT-ACAACTCAACTACATTTTCAAAT-AATCTGTGGTTTCTCTACATCTACCCACACAG B_lenok2N4 GTAAGTTACCTGGATGAGAC-AATTACCCATGTTCTGCCCTTTAAAACAATATAAAGTGTAAAAGAGTGACAGTTTCACT-----ATTTACCTTAAAAAGGAATTCCTCCATGATGCATGATTCCAAAATAAATAATAGGACATCTCAATTTGAACAGTCGACACAACTTAGTCATTAGTTATTGGGCAAGCAGA-CCCCCGATTG-TCTAAACTCCACGGGGAAATATATACTGTAGATAAGCAGAGCCAGCATCATGCATGGTGGAAATTAAATCTAGCCATGACATGGGAGTTTTAAATTGTACACTT--------------------------------------------------------------AAAA-TCAGC-AGTAAAACTTTGCTATACCTTAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTCAACTAAGGTGGGTAAAA-CAACCACATATCACAGTCATTGCAAGTAAAAC-CATCACTCTCTAA-TCGGCGGTTTCTCTACATCTACATTA-TCCAGCCATGTATCATGT-------AAATGATATGGCATCTCAAGCTGTACAAT-ACAACTCAACTACATTTTCAAAT-AATCTGTGGTTTCTCTACATCTACCCACACAG H_hucho2 GTAAGTTACCTGGATGAGACCAAT-ACCCATGTTATGCCCTTTAAAACCATATAAAGTGTAAAAGCTTGACAGTTTCACTCTGCTATTTACCTTAAAAATGAATTCCTCCATGATGCATGATTCCAAAATAAATAATAGGACATCTCAATTTGAACAGTCGACACAACTTAGTCATTAGTTATTGGGCAAGCAGA-CCCCCGATTG-TCTAAACTCCACGGGGAAATATATACTGTAGATAAGCAGAGCCAGCATCATGCATGGTGGAAATTAAATCTAGCCATGACATGG-AGTTTTAAATTGTACACTT--------------------------------------------------------------AAAA-TCAGC-AGTAAAATTTTGCTATACCTTAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTCAGCTAAGGTAGGTAAAA-CAACCACATATCACAGTCATTGCAAGTAAAAC-CATCACTCTCTAA-TCGGCGGTTTCTCTACGTCTACATTA-TCCAGCCATGTATCATGT-------AAATGATATGGCATCTCAAGCTGTACAAT-ACAACTCAACTTCATTTTCAAAT-AATCTGTGGTTTCTCTACATCTACCCACACAG H_taimen2 GTAAGTTACCTGGATGAGAC-AATTACCCATGTTATGCCCTTTAAAACCATATAAAGTGTAAAAGCTTGACAGTTTCACTCTGCTATTTACCTTAAAAATGAATTCCTCCATGATGCATGATTCCAAAATAAATAATAGGACATCTCAATTTGAACAATCGACACAACTTAGTCATTAGTTATTGGGCAATCAGA-CCCCCGATTG-TCTAAACTCCACGGGGAAATATATACTGTAGATAAGCAGAGCCAGCATCATGCATGGTGGAAATTAAATCTAGCCATGACATGG-AGTTTTAAATTGTACACTT--------------------------------------------------------------AAAA-TCAGC-AGTAAAATTTTGCTATACCTTAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTCAACTAAGGTAGGTAAAA-CAACCACATATCACAGTCATTGCAAGTAAAAC-CATCACTCTCTAA-TCGGCAGTTTCTCTACGTCTACATTA-TCCAGCCATGTATCATGT-------AAATGATATGGCATCTCAAGCTGTACAAT-ACAACTCAACTTCATTTTCAAAT-AATCTGTGGTTTCTCTACATCTACCCACACAG P_perryi2 GTAAGTTACCTGGCTGAGAC-AA---------------------------------------------------------------------------------TCCTCCATGATGCATGATTCCAAAATAAATAATAGGGCATCTCAATTTGAACAATCGATACAACTTAGTCATTAGTTATTGGGCAAGCAGATCCCC-GATTG-TCTAAACTCCATGGGTAAATATATACTGTAGATAAGCAGAGCCAGCATCATGCATGGTGGAAATTAAATCTAGCCATGACA-GGGAGTTTTAAATTGTACACTT--------------------------------------------------------------AAAA-TCGGC-AGTAAAATGTTGCTATACCTCAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTCAACTAAGGTAGGTAAAA-CAACCACATATCACAGTCCTTGTAAGTAAAACCCATCACTCTCTAA-TCGGCGGTTTCTCTACGTCTACATTC-TCCAGCCATGTATCATGTATCATGTAAATGATATGGCATCTCAAGCAGTACAAT-ACAACTCAACTTCATTTTCTAAT-AATCTGTGGTTTCTCTACATCTACACACACAG S_trutta2 GTAAGTTAC-TGGCTGAGACAAA---------------------------------------------------------------------------------TCCTCCATGATGCATGATTCCGAAATAAATAATAGGGCATCTCAATTTGAACAATCGATACAACTTAGTCATTAGTTATTGGGCAAGCAGATCCCC-GATTG-TGTAAACTCCATGGGTAAATATATACTGTAGGTTAGCAGAGCCAGCATCATCCATGGTGGAAATTAAATCTAGCCATGACA-AGGAGTTTTAAATTGTACACTT--------------------------------------------------------------AAAA-TCGGC-AGTAAAATGTTGCTATACCTCAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTCAACTAAGGTAGGTAAAA-CAACCACATATCACAGTCCTTGTAAGTAAAAC-CATCACTCTCTAA-TCGGCGATTTCTCTACGTCTACATTC-TCCAGCCATGTATCATGT-------AAATGATATGGCATCTCAAGCTGTACAAT-ACAACTCAACTTCATTTTCTAAT-AATCTGTG-TTTCTCTACATCTACACACACAG Salmthymus GTAAGTTACCTGGCTGAGAC-AA---------------------------------------------------------------------------------TCCTCCATGATGCATGATTCCGAAATAAATAATAGGGCATCTCAATTTGAACAATCGATACAACTTAGTCATTAGTTATTGGGCAAGCAGATCCCC-GATTG-TGTAAACTCCATGGGTAAATATATACTGTAGGTTAGCAGAGCCAGCATCATCCATGGTGGAAATTAAATCTAGCCATGACA-AGGAGTTTTAAATTGTACACTT--------------------------------------------------------------AAAA-TCGGC-AGTAAAATGTTGCTATACCTCAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTCAACTAAGGTAGGTAAAA-CAACCACATATCACAGTCCTTGTAAGTAAAAC-CATCACTCTCTAA-TCGGCGATTTCTCTACGTCTACATTC-TCCAGCCGTGTATCATGT-------AAATGATATGGCATCTCAAGCTGTACAAT-ACAACTCAACTTCATTTTCTAAT-AATCTGTGGTTTCTCTACATCTACACACACAG S_salar2 GTAAGTTACCTGGCTGAGAC-AA---------------------------------------------------------------------------------TCCTCCATGATGCTAGATTCCAAAATAAATAATAGGGCATCTCAATTTGAACAATCGATACAACTTAGTCATTAGTTATTGGGCAAGCAGATCCC--GATTG-TGTAAACTCCATGGGTAAATATATACTGTAGATTAGCAGAGCCAGCATCATGCATGGTGGAAATTAAATCTAGCCATGACA-AGGAGTTTTAAATTGTACACTT--------------------------------------------------------------AAAA-TCAGC-AGTAAAATGTTGCTATACCTCAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCAACTAAGGTAGGTAAAA-CAACCACATATCACAGTCCTTGTAAGTAAAAC-CATCACTCTCTAA-TCGGCGATTTCTCTACGTCTACATTC-TCCAGCCATGTATCATGT-------AAATGATATGGCATCTCAAGCTGTACAAT-ACAACTCAACTTCATTTTCTAAT-AATCTGTGGTTTCTCTGCATCTACACACACAG S_alpinus2 GTATGTTACCTGGATGAGAC-AA---------------------------------------------------------------------------------TCCTCCACGATGCATGATTCCAAAATAAATAATAGGGCATCTCAATTTGAACAATCAATACAACTTAGTCATTAGTTATTGGGCAAGCAGATCCCCCGATTG-TCTAAACTCCATGGGTAAATATATACTGTAGATAAGCAGAGCCAGCATCATGCATGGTGGAAATGAAATCTAGCCATGACA-GGGAGTTTTAAATTGTCCACTT--------------------------------------------------------------AAAA-TCGGC-AGTAAAATGTTGCTATACCTCAGTGATAGAGGTGATAGAACACATGTAAAGACTTCAACATAGGAATGACCAATATCAATATTCAGACTATGGTGTCACTGCAGAAGAATTAAAAGGTTCTAAGTGACATCAGACCATCAGGGTGCCATTTGCCATGTCTCTTCCCAACCGAAACGAACACTATTATTATTCTCTTCAACTAAGGTAGGTAAAA-CAACCACATATCACAGTCCTTGTAAGTAAAACCCATCACTCTCTAA-TCGGGGGTTTCTCTACGTCGACATTC-TCCAGCCATGTATCATGT-------AAATGATATGGCATCTCAAGCTGTACAAT-ACAACTCAACTTCATTTTCTAA-CAATCTGTGGTTTCTCTACATCTACACACACAG S_namayc2 GTAAGTTACCTGGCTGAGCC-AA---------------------------------------------------------------------------------TCCTCCATGATGCATGATTCCAAAATAAATAATAGGGCATCTCAATTTGAACAATCAATACAACTTAGCCATTAGTTATTGGGCAAGCAGATCCCC-GATTG-TCTAAACTCCATGGGTAAATATATACTGTAGATAAGCAGAGCCAGCATCATGCATGGTGGAAATGAAATCTAGCCATGACA-GGGAGTTTTAAATTGTCCACTT--------------------------------------------------------------AAAA-TCGGC-AGTAAAATGTTGCTATACCTCAGTGATAGAGGTGATAGAACACATGTAAAGACTTCAACATAGGAATGACCAATATCAATATTCAGACTATGGTGTCACTGCAGAAGAATTAAAAGGTTCTAAGTAACATCAGACCATCAGGGTGCCATTTGCCATGTCTCTTCCCAACCGAAACAAACACTATTATTATTCTCTTCAACTAAGGTAGGTAAAA-CAACCACATATCACAGTCCTTGTAAGTAAAACCCATCACTCTCTAA-TCGGGGGTTTCTCTACGTCTACATTC-TCCAGCCATGTATCATGT-------AAATGATATGGCATCTCAAGCTGTACAAT-ACAACTCAACTTCATTTTCTACTCAATCTGTGCTTTCTCTACATCTACACACACAG O_kisut2a GTAAGTTACCTGGCTGAGAC-AA---------------------------------------------------------------------------------TCCTCCATGATGCACAATTCCAACATGAATAATAGGGCATCTCAATTTGAACAA-------------GTCATTAGTTATTGGGCAAGCAGATCCCC-GATTG-TCTAAACTCCATGGGTAAATATATACTGTAGATAAGCAGAACCAGCATCATGCATGGTGGAAATTAACTCTAGCCATGACA-GGAAGTTTTAAATTGTACACTT--------------------------------------------------------------AAAA-TCAAC-AGTAAAATGTTGCTATACCTCAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTCAACTAAGGTAGTGAAAA-CAATCACATATCACAGTCCTTGTAAGTAAAACCCATCACTCTCTAA-TCGGCGGTTTCTCTACGTCTACATTC-TCCAGCAATGTTT-ATGT----------------GGCATCTCAAGCTGTACAATTACAACTCAACTTCATTTTCTAATCA-TCTGTGGTTTCTCTACATCTACACACACAG O_nerka2 GTAAGTTACCGGGCTGAGAC-AA---------------------------------------------------------------------------------TCCTCCATGATGCACAATTCCAACATGAATAATAGGGCATCTCAAGTTGAACAATCGATACAACTTAGTCATTAGTTATTGGGCAAGCAGATCCCC-GATTG-TCTAAACTCCATGGGTAAATATATACTGTAGATAAGAAGAACCAGCATCATGCATGGTAGAAATTAAATCTAGCCATGACA-GGGAGTTTTAAATTGTACACTT--------------------------------------------------------------AAAA-TCGGC-AGGAAAATGTTGCTATACCTCAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTC-------------AAAAACAACCACATGTCATAGTCCTTGTAAGTAAAACCCATCACTCTCTAA-TCGGCGGTTTCTCTACGTCTACATTC-TCCAGCAATGTGTCATGT-------AAATGATATGGCATCTCAAGCTGTACAATTACAACTCAACTTCATTTTCTAAT-AATCTGTGGTTTCTCTACATCTACACACACAG O_clarki2 GTAAGTTACCTGGCTGAGAC-AA---------------------------------------------------------------------------------TCCTCCATGATGCACGATTCCAACATGAATAATATGGCATCTCAATTTGAACAATCGATACAACTTAGTCATTAGTTATTGGGCAAGCAGATCCCC-GATTG-TCTAAACTCCATGGGTAAATATATACTGTAGATAAGCAGAACCAGCATCATGCATGGTGGAAATTAAATCTAGCCATGACA-GGGAGTTTTAAATTGTACACTT--------------------------------------------------------------AAAA-TCGGC-AGTAAAATAATGCTATACCTCAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTC-------------AAAAACAACCACATATCATAGTCCTTGTAAGTAAAACCCATCACTCTCTAA-TCGGCGGTTTCTCTACGTCTACATTC-TCCAGCCATGTATCATGT-------AAATGATATGGCATCTCAAGCTGTACAATTACAACTCAACTTCATTTTCTAAT-AATCTGTGGTTTCTCTACATCTACACACACAG O_mykiss GTAAGTTACCTGGCTGAGAC-AA---------------------------------------------------------------------------------TCCTCCATGATGCACGATTCCAACATGAATAATAGGGCATCTCAATTTGAACAATCGATACAACTTAGTCATTAGTTATTGGGCAAGCAGATCCCC-GATTG-TCTAAACTCCATGGGTA---ATATACTGTAGATAAGCAGAACCAGCATCATGTATGGTGGAAATTAAATCTAGCCATGACA-GGGAGTTTTAAATTGTACACTT--------------------------------------------------------------AAAA-TCGGC-AGTAAAATAATGCTATACCTCAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTC-------------AAAAACAACCACATATCATAGTCCTTGTAAGTAAAACCCATCACTCTCTAAATCGGCGGTTTCTCTACGTCTACATTC-TCCAGCCATGTATCATGT-------AAATGATATGGCATCTCAAGCTGTACAATTACATCTCAACTTCATTTTCTAAT-AATCTGTGGTTTCTCTACATCTACACACACAG O_gorbus2 GTAAGTTACCTGGCTGAGAC-AA---------------------------------------------------------------------------------TCCTCCATGATGCACAATTCCAACATGAATAATAGGGCATCTCAATTTGAACAATCGATACAACTTAGTCATTAGTTATTGGGCAAGCAGATCCCC-GATTG-TCTAAACTCCATGGGTAAATATATACTGTAGATAAGAAGAACCAGCATCATGCATGGTGGAAATTAAATCTAGCCATGACA-GGGAGTTTTAAATTGTACACTT--------------------------------------------------------------AAAAATCGGC-AGGAAAATGTTGCTATACATCAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTC-------------AAAAACAACCACATTTCATAGTCATTGTAAGTAAAACCCATCACTCTCTAA-TTGGCGGTTTCTCTACGTCTACATTCATGCAGCAATGTATCATGT-------AAATGATATGGCATCTCAAGCTGTACAATTACAACTCAACTTCATTTTCTAAT-AATCTGTGGTTTCTCTACATCTACACACACAG O_keta2 GTAAGTTACCTGGCTGAGAC-AA---------------------------------------------------------------------------------TCCTCCATGATGCACAATTCCAACATGAATAATAGGGCATCTCAATTTGAACAATCGATACAACTTAGTCATTAGTTATTGGGCAAGCAGATCCCC-GATTG-TCTAAACTCCATCGGTAAATATATACTGTAGATAAGAAGAACCAGCATCATGCATGGTGGAAATTAAATCTAGCCATGACA-GGGAGTTTTAAATTGTACACTTAAAAAAATCAAATCAAATAAAAAAATGTAATAAAAAAAAATAACAAAATAAAATAAATTTAAAAAAATTGGC-AGGAAAATGTTGCTATACCTCAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTC-------------AAAAACAACCACATTTCATAGTCCTTGTAAGTAAAACCCATCACTCTCTAA-TCGGCGGTTTCTCTACGTCTACATTC-TCCAGCAATGTATCATGT-------AAATGATATGGAATCTCAAGCTGTACAATTACAACTCAACTTCATTT-CTAAT-AATCTGTGGTTTCTCTACATCTACACACACAG O_tshawy2 GTAAGTTAC-TGGCTGAGAC-AA---------------------------------------------------------------------------------TCCTCCATGATGCACAATTCCAACATGAATAATAGGGCATCTCAATTTGAACAA-------------GTCATTAGTTATTGGGCAAGCAGATCCCC-GATTG-TCTAAACTCCATGGGTAAATATATACTGTAGATAAGCAGAACCAGCATCTTGCATGGTGGAAATTAAATCTAGCCATGACA-GGAAGTTTTAAATTGTACACTT--------------------------------------------------------------AAAA-TCAGC-AGTAAAATGTTGCTATACCTCAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTCAACTAAGGTAGGTAAAAACAACCACATATCACAGTCCTTGTAAGTAAAACCCATCACTCTCTAA-TCGGCGGTTTCTCTACGTCTACATTC-TCCAGCAATGTATCATGT-------AAATGATATGGCATCTCAAGCTGTACAATTACAACTCAACTTCATTTTCTAATCA-TCTGTGGTTTCTCTACATCTACACACACAG S_conflu GTAAGTTACCTGGCTGAGAC-AA---------------------------------------------------------------------------------TCCTCCATGATGCATGATTCCAAAAGAAATAATAGGGCATCTCAATTTGAACAATCAATACAACTTAGTCATTAGTTATTGGGCAAGCAGATCCCCCGATTG-TCTAAACTCCATGGGTAAATATATACTGTAGATAAGCAGAGCCAGCATCATGCATGGTGGAAATTAAATCTAGCCATGACT-GGGAGTTTTAAATTGTCCACTT--------------------------------------------------------------AAAA-TCGGC-AGTAAAATGTTGCTATGCCTCAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTCAACTAAGGTAGGTAAAA-CAACCACATATCACAGTCCTTGTAAGTAAAACCCATCACTCTCTAA-TCGGCGGCTTCTCTACGTCTACATTC-TCCAGCCATGTATCATGT-------AAATGACATGGCATCTCAAGCTGTACAAT-ACAACTCAACTTCATTTTCTAAC-AATCTGTGGTTTCTCTACATCTTCACACACAG [ 111111111-21122111-1-11---------------------------------------------------------------------------------111-21121111112211111112122111111121211111111211111212-------------111111111111111111121111-111--21111-12111111111221-21---1111111111122211211121111111121221111121111121121111111111121-11-1111111111111211111--------------------------------------------------------------1111-12221-11211113321-----211121111-----------------------------------------------------------------------------------------------------------------------------------------------------------------------21111-------------1111-11121111232112112121113111111111-1111111111111-12111223111111112111111111-1211112111131-1111----------------12211111111121111111-11122111111211111-1212--1-111111-11111111111112121111111 ] B_lenok2N2 0 0 1 0 0 1 0 0 1 0 0 1 0 0 0 B_lenok2N4 0 0 1 0 0 1 0 0 1 0 0 1 0 0 0 H_hucho2 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 H_taimen2 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 P_perryi2 0 0 1 1 ? ? 0 0 0 0 1 1 0 0 1 S_trutta2 1 0 0 1 ? ? 0 0 0 0 1 1 0 0 1 Salmthymus 0 0 1 1 ? ? 0 0 0 0 1 1 0 0 1 S_salar2 0 0 1 1 ? ? 0 0 0 1 ? 1 0 0 1 S_alpinus2 0 0 1 1 ? ? 0 0 0 0 0 1 0 0 1 S_namayc2 0 0 1 1 ? ? 0 0 0 0 1 1 0 0 1 O_kisut2a 0 0 1 1 ? ? 0 1 0 0 1 1 0 0 1 O_nerka2 0 0 1 1 ? ? 0 0 0 0 1 1 0 0 1 O_clarki2 0 0 1 1 ? ? 0 0 0 0 1 1 0 0 1 O_mykiss 0 0 1 1 ? ? 0 0 0 0 1 1 0 1 1 O_gorbus2 0 0 1 1 ? ? 0 0 0 0 1 1 0 0 1 O_keta2 0 0 1 1 ? ? 0 0 0 0 1 1 0 0 1 O_tshawy2 1 0 1 1 ? ? 0 1 0 0 1 1 0 0 1 S_conflu 0 0 1 1 ? ? 0 0 0 0 0 1 0 0 1 [Gap Lengths] [ 1 1 1 81 1 5 1 13 1 2 1 1 1 3 1] B_lenok2N2 1 1 1 1 1 1 0 1 1 1 1 0 0 1 0 B_lenok2N4 0 1 1 1 0 1 0 1 1 1 1 0 0 1 0 H_hucho2 1 1 1 1 0 1 0 1 1 1 1 0 0 1 0 H_taimen2 1 1 1 1 0 1 0 1 1 1 1 0 0 1 0 P_perryi2 0 1 1 1 0 1 0 1 0 1 1 0 0 1 0 S_trutta2 0 1 1 1 0 1 0 1 1 1 1 0 0 1 0 Salmthymus 0 1 1 1 0 1 0 1 1 1 1 0 0 1 0 S_salar2 0 1 1 1 0 1 0 1 1 1 1 0 0 1 0 S_alpinus2 0 1 1 1 0 0 0 1 0 1 1 0 0 1 0 S_namayc2 0 1 1 1 0 0 0 1 0 1 1 0 0 1 0 O_kisut2a 0 1 1 1 0 1 0 1 0 1 1 1 1 0 0 O_nerka2 0 1 1 1 0 1 1 0 0 1 1 0 0 0 0 O_clarki2 0 1 1 1 0 1 1 0 0 1 1 0 0 0 0 O_mykiss 0 1 1 1 0 1 1 0 0 0 1 0 0 0 0 O_gorbus2 0 1 0 1 0 1 1 0 0 1 0 0 0 0 0 O_keta2 0 0 0 1 0 1 1 0 0 1 1 0 0 0 1 O_tshawy2 0 1 1 1 0 1 0 0 0 1 1 0 0 0 0 S_conflu 0 1 1 1 0 1 0 1 0 1 1 0 0 1 0 [Gap Lengths] [ 1 62 1 1 5 167 13 1 1 1 1 1 16 1 1] B_lenok2N2 0 1 0 0 B_lenok2N4 0 1 0 0 H_hucho2 0 1 0 0 H_taimen2 0 1 0 0 P_perryi2 0 1 0 0 S_trutta2 0 1 0 1 Salmthymus 0 1 0 0 S_salar2 0 1 0 0 S_alpinus2 1 0 0 0 S_namayc2 0 0 0 0 O_kisut2a 0 0 1 0 O_nerka2 0 1 0 0 O_clarki2 0 1 0 0 O_mykiss 0 1 0 0 O_gorbus2 0 1 0 0 O_keta2 0 1 0 0 O_tshawy2 0 0 1 0 S_conflu 0 1 0 0 [Gap Lengths] [ 1 1 1 1] ; ENDBLOCK; [New log weights formula used ie 100ln(k+1)] BEGIN ASSUMPTIONS; EXSET no.indels = 785-818; EXSET no.sequence = 1-784; WTSET lnweights = 118:all,69:785-818, 441:788, 179:790, 264:792, 110:794, 139:798, 414:801, 179:804, 512:805, 264:806, 283:812; ENDBLOCK;