Links

Kosik Lab Internal (elgg)

miRNA target predictions:

• Pictar (NYU)
• miRBase Targets (Sanger)
• miRanda (Memorial Sloan-Kettering)
• TargetScan (MIT)

Bioinformatics & Databases

• NCBI BLAST
• DNA/RNA sequence manipulation tool
• miRBase sequences (Sanger)
• PFAM and SMART domain databases
• BioMart data integration system
• Allen Brain Atlas
• Ensembl genomic database
• UCSC Genome Browser
• KEGG pathway database
• NCBI GENSTAT expression of the genes in the central nervous system of mouse
• Point 2006 protein interaction predictions
• PDZBase PDZ-ligand interaction database

Gene Evolution

• EvolMAP estimating timing of gene duplications and losses
• TreeFam phylogenetic trees of animal genes
• Inparanoid eukaryotic ortholog groups
• Metazome comparative genomics tool within the Metazoa