Summary of Genetic Map Locations
Contents:
MAC-destined Loci on MIC Chromosomes:
MIC-limited loci
MAC-destined Loci - Summary of genetic mapping results
Summary of genetic mapping results, hierarchically organized according to MIC chromosome arms, MIC linkage groups and MAC coassortment groups. See Illustrated Guide to MIC & MAC Genetic Maps for an introduction to the relationship between tne genetic views of the MIC and MAC genome.
Additional notes:
- Linkage groups. MIC linkage groups are based on the frequency of meiotic recombination and MIC chromosome arms are their physical basis.
- Coassortment groups. MAC coassortment groups are based on the linked assortment of loci during MAC division and MAC chromosomes are their physical basis. (B) or (C) indicate strongly biased assortment toward the B or C3 allele, respectively, observed in all members of the coassortment group. ND refers to loci that remain to be tested for coassortment.
- Genetic Loci. The list includes RAPD DNA polymorphisms (prefixed by a "1"), genes (unprefixed) and Chromosome breakage site polymorphisms (prefixed by Cbs). The name of a RAPD locus followed by "/R" (e.g. 1AT03/R) stands for a polymorphic pair (e.g., 1AT03 and 1AT03R) that behave as alleles of a single locus. (The Catalog contains a detailed description of loci and phenotypes. See Appendix 1 of the Tetrahymena methods book for an introduction to Tetrahymena genetic nomenclature.)
- MAC chromosome size. Determined by using cloned DNA from the locus shown in bold (work in progress).
|
Linkage Group |
Coassort. Group |
Genetic loci |
MAC chr. Size (Mb) |
|
mat |
AT03 |
1AT03/R 1JO16 1JP33/R 1LS15 |
|
|
mat |
BD06 (C) |
1BD06 1SP09 |
|
|
mat |
CH01 |
1CH01 |
|
|
mat |
JB03 |
1JB03 |
0.23 |
|
mat |
JB10R |
1JB10R |
0.07 |
|
mat |
JO07 |
1JO07 |
|
|
mat |
JO13R |
1GM09 1JO13R |
1.3 |
|
mat |
JP17 |
1JP17 |
|
|
mat |
KN03 |
1KN03 |
1.0 |
|
mat |
mat |
mat |
|
|
mat |
PM08 |
1EO03R
1JO09 1KF02 1PM08 |
1.2 |
|
mat |
rDNA (C) |
PMR1 1EM10 |
0.021 |
|
mat |
RT01 |
1RT01 |
0.55 |
|
mat |
SN09 |
1SN09 |
>3 |
|
mat |
XS24 |
1EM04 1SN05 1XS24 |
|
|
mat |
XS36 |
1BD11 1XS36 |
|
|
mat |
YD19 |
1MJ10aR 1SN07a 1YD19 |
0.50 |
MIC Chromosome 1R
|
Linkage Group |
Coassort. Group |
Genetic loci |
MAC chr. Size (Mb) |
|
BD03 |
BD03 |
1BD03 |
0.21 |
|
|
|
|
|
|
CHX1 |
CHX1 |
1JB30 1JO91R 1SN14 |
|
|
CHX1 |
EstA |
1BR20 1LC04 1XS32 EstA |
|
|
CHX1 |
JB12 |
1JB12 |
|
|
CHX1 |
JB14 |
1JB14 |
|
|
CHX1 |
JP12a (B) |
1JO18 1JP12a |
|
|
CHX1 |
LC09R |
1LC09R |
|
|
CHX1 |
ML03 |
1EM06 1JB08 1JB22 1JO14 1KN02
1LC03 1LS07 1ML03 |
|
|
|
|
|
|
|
GAL1 |
AT01 |
1AT01 |
0.22 |
|
GAL1 |
ATO1R |
1AT01R |
|
|
GAL1 |
GAL1 |
1JO65 GAL1 |
1.1 |
|
GAL1 |
GRL3 |
GRL3 GRL4 |
|
|
GAL1 |
GRL7 |
1JO10 1LC21 1LS20R GRL7 |
|
|
GAL1 |
JO03 |
1JO03 |
0.23 |
|
GAL1 |
JO51 |
1JO51 |
|
|
GAL1 |
LC10 |
1LC10 |
0.050 |
|
GAL1 |
LS18R |
1LS18R |
0.50 |
|
GAL1 |
MJ01 |
1MJ01 |
|
|
GAL1 |
MJ13R |
1MJ13R |
0.38 |
|
GAL1 |
MJ16R |
1EM09R 1EM19 1JO05 1JO05R 1JO56R
1LC02 1MJ13 1MJ16R 1SN03 |
|
|
GAL1 |
SP09a |
1SP09a |
|
|
GAL1 |
SP18R |
1BR11 1JP18 1JP18a 1JP18R 1LS17
1SP18R 1XS03 |
|
|
GAL1 |
Cbs826A |
Tt826A |
|
|
GAL1 |
XS17 |
1JB05 1XS17 |
0.68 |
|
GAL1 |
YD02 |
1JB28 1YD02 1SN02 |
|
|
GAL1 |
YD11 |
1YD11 |
0.38 |
|
GAL1 |
ND |
1EM01R 1LS21a |
|
|
Linkage Group |
Coassort. Group |
Genetic loci |
MAC chr. Size (Mb) |
|
SP13 |
SP13 |
1LR03 1SP13 |
|
|
|
|
|
|
|
XS51 |
XS51 |
1JO94 1XS51 |
|
MIC Chromosome 2R
|
Linkage Group |
Coassort. Group |
Genetic loci |
MAC chr. Size (Mb) |
|
JO66 |
XS27 |
1BR07b 1XS27 |
|
|
|
|
|
|
|
MPR1 |
AT04 |
1AT04 1YD13 |
|
|
MPR1 |
MPR1 |
1JO71 1KP02R 1LS21 MPR1 1XS47
|
|
|
|
|
|
|
|
XS41 |
XS41 |
1XS41 |
|
|
Linkage Group |
Coassort. Group |
Genetic loci |
MAC chr. Size (Mb) |
|
FBR1 |
FBR1 |
FBR1 |
|
|
FBR1 |
JO25 (B) |
1JO25 |
|
|
FBR1 |
JP03 |
1JP03 |
|
|
FBR1 |
JP23 |
1JP23 1MJ18R |
|
|
|
|
|
|
|
JB36 |
JB35 (B) |
1JB35 |
|
|
JB36 |
JB36 |
1JB36 1JB36R |
|
|
|
|
|
|
|
XS43 |
BD22 |
1BD22 |
|
|
XS43 |
JB26 |
1JB26 |
|
|
XS43 |
XS43 (B) |
1XS43 |
|
MIC Chromosome 3R
|
Linkage Group |
Coassort. Group |
Genetic loci |
MAC chr. Size (Mb) |
|
AcpA |
XS61R |
1XS61R |
|
|
AcpA |
ND |
AcpA |
|
|
|
|
|
|
|
JO06 |
JB16 |
1EM16R 1JB16 1JB16R 1JP24 |
|
|
JO06 |
JB21 (C) |
1JO35R |
|
|
JO06 |
LC09 |
1LC09 |
|
|
JO06 |
LC21R |
1BD13 1BD28R 1LC21R |
|
|
JO06 |
XS60R |
1JO22 1XS08 1XS60R |
|
|
JO06 |
ND |
1JO06 |
|
|
|
|
|
|
|
LC08 |
JB21 |
1EM08 1GM03 1JB21 1LC08 |
|
|
Linkage Group |
Coassort. Group |
Genetic loci |
MAC chr. Size (Mb) |
|
AS01 |
JB18 |
1JB18 |
|
|
AS01 |
JO27 |
1JO27 |
|
|
AS01 |
JO27a |
1JO27a |
|
|
AS01 |
JP06a |
1JP06a |
|
|
AS01 |
JP19 |
1JP19 |
|
|
AS01 |
LS01 |
1LS01 1XS15a |
|
|
AS01 |
LS18 |
1LS18 |
|
|
AS01 |
LS22 |
1LS22 |
|
|
AS01 |
YD20 |
1BB01 1EM20 1GM07a 1LS03 1MJ04
1YD20 1YD03 |
|
|
AS01 |
ND |
1JO24 1JO70 1XS15 |
|
|
|
|
|
|
|
BR19 |
BR19 |
1BR19/R 1EM01aR 1YD12 |
|
|
BR19 |
JO84R |
1JO84R |
|
|
BR19 |
JP22 |
1JP22 |
|
|
BR19 |
LK04 |
1AT11 1JB37 1JP21 1LK04 |
|
|
BR19 |
MJ08 |
1MJ08 |
|
|
|
|
|
|
|
JB06 |
JO02 (B) |
1JO02 |
|
|
JB06 |
JP21a |
1JP21a 1LS09 |
|
|
|
|
|
|
|
JO52 |
JO52 |
1JO52 |
|
|
|
|
|
|
|
JO63 |
AT18 |
1JO63 |
|
|
|
|
|
|
|
QD02 |
JO52R |
1JO52R |
|
|
QD02 |
QD02 |
1BR21 1QD02 |
|
|
QD02 |
ND |
1JO84aR |
|
|
|
|
|
|
|
QD02R |
AT18 |
1AT18 |
|
|
QD02R |
JB12R |
1JB12R 1JO21 1QD02R |
|
|
QD02R |
KF03 |
1KF03 |
|
|
QD02R |
ML04R |
1JO82R 1LS02R 1ML04R |
|
|
QD02R |
ND |
1JO88R 1XS42 |
|
MIC Chromosome 4R
|
Linkage Group |
Coassort. Group |
Genetic loci |
MAC chr. Size (Mb) |
|
LC01 |
AT04R C |
1AT04R |
|
|
LC01 |
AT17 |
1AT17 |
|
|
LC01 |
JB19 |
1JB19 |
|
|
LC01 |
JB22R |
1JB22R |
|
|
LC01 |
JO26 |
1JO26 |
|
|
LC01 |
JO30R C |
1JO30R |
|
|
LC01 |
JO62 |
1JO06a 1JO62 |
|
|
LC01 |
LC20 |
1LC20 |
|
|
LC01 |
LC26 |
1BD10 1LC26 |
|
|
LC01 |
LS04 |
1LS04 |
|
|
LC01 |
MJ10R |
1MJ10R |
|
|
LC01 |
XS16 |
1JO10R 1JO34R 1JO36R 1JO37R 1JO75aR
1XS16 |
|
|
LC01 |
YD11a |
1YD11a |
|
|
LC01 |
ND |
1JO20R 1JO60 1KP03R 1LC06 1LS14
1XS74R |
|
|
|
|
|
|
|
XS16 |
XS16 |
1BR01 1GM04 |
|
|
Linkage Group |
Coassort. Group |
Genetic loci |
MAC chr. Size (Mb) |
|
JB04 |
BR02 |
1BR02/R 1BR03 1BR07/R 1JB26R 1JO50
1JP01/R 1LS15R 1SP11 |
|
|
JB04 |
BR13 |
1BR13 1XS38 |
|
|
JB04 |
JO67 |
1JB01 1JO56 1JO67 1LC18a |
|
|
JB04 |
JP08d |
1BR09 1JP08d 1LC20R 1MJ17R |
|
|
JB04 |
JP12 |
1BR14 1EM02 1EM02a 1JO01 1JP12
1LS10 1MJ15R 1XS53 |
|
|
JB04 |
LC16 |
1BD27 1JP22R 1LC16 |
|
|
JB04 |
LR01R |
1GM09R 1JB02 1JB23 1JP09 1LC18
1LC19 1LR01R 1SN07R 1SN21a 1SP13R 1XS11 1YD07 |
|
|
JB04 |
RK04a |
1AS02R 1BD34 1RK04a |
|
|
JB04 |
RK06R |
1RK05bR 1RK06R |
|
|
JB04 |
YD14 (C) |
1YD14 |
|
|
JB04 |
ND |
1MJ11R 1SP15R |
|
|
|
|
|
|
|
JO08 |
JO08 (B) |
1JO08 |
|
|
|
|
|
|
|
JP02 |
JB29 |
1JB29 |
|
|
JP02 |
JO75R |
1JO75R |
|
|
JP02 |
JP04 |
1JP02 1JP04 |
|
|
JP02 |
LS28R |
1LS28R |
|
|
JP02 |
XS01R |
1XS01R |
|
|
|
|
|
|
|
LC16a |
BD34R |
1BD34R |
|
|
LC16a |
JO68 |
1GM08 1LC02a 1RK08 1JO68 |
|
|
LC16a |
LC16a |
1LC16a |
|
|
LC16a |
SP16R |
1SP16R |
|
|
LC16a |
YD10 |
1YD10 |
|
|
LC16a |
YD16 |
1YD16 |
|
MIC-limited
loci - Summary of genetic mapping results
MIC-limited loci, hierarchically
arranged by MIC chromosome arm and MIC linkage group. MIC-limited DNA polymorphisms are located on DNA segments
that are deleted from the MAC chromosome through site-specific internal deletions during MAC differentiation. They
allow direct testing of the germline genotype, regardless of MAC genotype.
|
Chr. arm |
Linkage Group |
Genetic loci |
|
1L |
mat |
1AS02 1BB01R 1BD08R 1BR04 1EO01
1JO39R 1JP11 1JP34 1SP11R 1XS10 1XS19 1XS35 1YD20R 1LS03R |
|
1L |
YD03a |
1YD03a |
|
1R |
CHX1 |
1BR15 1EM03 1LC11 |
|
1R |
GAL1 |
1JO83R Cbs826 |
|
1R |
XS51aR |
1XS51aR |
|
2L |
MJ10 |
1MJ10 |
|
2R |
JO66 |
1JO64 1JO66 1JO94R |
|
2R |
MPR1 |
1CH02 1LC04R |
|
3L |
JB36 |
1JB15 1LC12 |
|
3R |
JO06 |
1RK01R |
|
3R |
KP04R |
1EM17aR 1JO04R 1KP01R 1KP04R 1XS72R
|
|
4L |
AS01 |
1RK04 1XS75R |
|
4L |
BR19 |
1EM12 1JO93R 1KF04 1LS02 1RK03
1SN11 1SN21 |
|
4L |
JB06 |
1JB06 1JO04 1LC25 1ML02 |
|
4L |
QD02 |
1LN01t |
|
4R |
BD16 |
1BD16 |
|
4R |
LC01 |
1JP05 1JP27 |
|
5 |
JB04 |
1AT06 1BD23R 1BD25 1BR05 1BR08
1EM17 1GM02 1JB04 1JB17 1JB32 1JB33 1JO10a 1JO53 1JO69 1JP06 1LC07 1LC10a 1LS12 1QD03R 1SN13 1SN22 1SP10 1SP18
1SP18aR 1XS49 Cbs1 |
|
5 |
JP02 |
1GM07 1MJ14R Cbs4 |
|
5 |
LC05 |
1LC05 |
|
5 |
LC16a |
1XS41a |
|
MAC-destined loci in: |
||||||
|
AS-GM |
JB-JO |
JP-LS |
MJ-YD |
Genes |
CbsP |
|
|
Other pages: |